The coding capacity of SARS-CoV-2 Y Finkel, O Mizrahi, A Nachshon, S Weingarten-Gabbay, D Morgenstern, ... Nature 589 (7840), 125-130, 2021 | 633 | 2021 |
Systematic discovery of cap-independent translation sequences in human and viral genomes S Weingarten-Gabbay, S Elias-Kirma, R Nir, AA Gritsenko, ... Science 351 (6270), aad4939, 2016 | 381 | 2016 |
Structured elements drive extensive circular RNA translation CK Chen, R Cheng, J Demeter, J Chen, S Weingarten-Gabbay, L Jiang, ... Molecular cell 81 (20), 4300-4318. e13, 2021 | 189 | 2021 |
The grammar of transcriptional regulation S Weingarten-Gabbay, E Segal Human genetics 133, 701-711, 2014 | 127 | 2014 |
Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs S Weingarten-Gabbay, S Klaeger, S Sarkizova, LR Pearlman, DY Chen, ... Cell 184 (15), 3962-3980. e17, 2021 | 117 | 2021 |
Systematic interrogation of human promoters S Weingarten-Gabbay, R Nir, S Lubliner, E Sharon, Y Kalma, ... Genome research 29 (2), 171-183, 2019 | 104 | 2019 |
Noise in gene expression is coupled to growth rate L Keren, D Van Dijk, S Weingarten-Gabbay, D Davidi, G Jona, ... Genome research 25 (12), 1893-1902, 2015 | 94 | 2015 |
The translation initiation factor DAP5 promotes IRES-driven translation of p53 mRNA S Weingarten-Gabbay, D Khan, N Liberman, Y Yoffe, S Bialik, S Das, ... Oncogene 33 (5), 611-618, 2014 | 94 | 2014 |
Unraveling the determinants of microRNA mediated regulation using a massively parallel reporter assay I Vainberg Slutskin, S Weingarten-Gabbay, R Nir, A Weinberger, E Segal Nature Communications 9 (1), 529, 2018 | 54 | 2018 |
Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity AA Gritsenko, S Weingarten-Gabbay, S Elias-Kirma, R Nir, D De Ridder, ... PLoS Computational Biology 13 (9), e1005734, 2017 | 37 | 2017 |
SARS-CoV-2 infected cells present HLA-I peptides from canonical and out-of-frame ORFs S Weingarten-Gabbay, S Klaeger, S Sarkizova, LR Pearlman, DY Chen, ... Biorxiv, 2020.10. 02.324145, 2020 | 27 | 2020 |
DAP5 drives translation of specific mRNA targets with upstream ORFs in human embryonic stem cells M David, T Olender, O Mizrahi, S Weingarten-Gabbay, G Friedlander, ... Rna 28 (10), 1325-1336, 2022 | 20 | 2022 |
A shared architecture for promoters and enhancers S Weingarten-Gabbay, E Segal Nature genetics 46 (12), 1253-1254, 2014 | 20 | 2014 |
MS-based HLA-II peptidomics combined with multiomics will aid the development of future immunotherapies HB Taylor, S Klaeger, KR Clauser, S Sarkizova, S Weingarten-Gabbay, ... Molecular & Cellular Proteomics 20, 2021 | 17 | 2021 |
The HLA-II immunopeptidome of SARS-CoV-2 S Weingarten-Gabbay, DY Chen, S Sarkizova, HB Taylor, M Gentili, ... Cell reports 43 (1), 2024 | 11 | 2024 |
Toward a systematic understanding of translational regulatory elements in human and viruses S Weingarten-Gabbay, E Segal RNA biology 13 (10), 927-933, 2016 | 9 | 2016 |
Deciphering transcriptional regulation of human core promoters S Weingarten-Gabbay, R Nir, S Lubliner, E Sharon, Y Kalma, ... bioRxiv, 174904, 2017 | 3 | 2017 |
HLA-I immunopeptidome profiling of human cells infected with high-containment enveloped viruses S Weingarten-Gabbay, LR Pearlman, DY Chen, S Klaeger, HB Taylor, ... STAR protocols 3 (4), 101910, 2022 | 2 | 2022 |
Functional analysis of the AUG initiator codon context reveals novel conserved sequences that disfavor mRNA translation in eukaryotes G Hernández, A García, S Weingarten-Gabbay, RK Mishra, T Hussain, ... Nucleic Acids Research 52 (3), 1064-1079, 2024 | 1 | 2024 |
Pan-viral ORFs discovery using Massively Parallel Ribosome Profiling S Weingarten-Gabbay, MR Bauer, AC Stanton, S Klaeger, EK Verzani, ... bioRxiv, 2023.09. 26.559641, 2023 | 1 | 2023 |