| ModelFinder: fast model selection for accurate phylogenetic estimates S Kalyaanamoorthy, BQ Minh, TKF Wong, A Von Haeseler, LS Jermiin Nature methods 14 (6), 587-589, 2017 | 12349 | 2017 |
| Phylogenomics resolves the timing and pattern of insect evolution B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ... Science 346 (6210), 763-767, 2014 | 2667 | 2014 |
| SOAP3: Ultra-fast GPU-based parallel alignment tool for short reads CM Liu, T Wong, E Wu, R Luo, SM Yiu, Y Li, B Wang, C Yu, X Chu, K Zhao, ... Bioinformatics, 2012 | 323 | 2012 |
| SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner R Luo, T Wong, J Zhu, CM Liu, X Zhu, E Wu, LK Lee, H Lin, W Zhu, ... PloS one 8 (5), e65632, 2013 | 168 | 2013 |
| Mitochondrial DNA and trade data support multiple origins of Helicoverpa armigera (Lepidoptera, Noctuidae) in Brazil WT Tay, TK Walsh, S Downes, C Anderson, LS Jermiin, TKF Wong, ... Scientific Reports 7 (1), 45302, 2017 | 77 | 2017 |
| Mixture models of nucleotide sequence evolution that account for heterogeneity in the substitution process across sites and across lineages V Jayaswal, TKF Wong, J Robinson, L Poladian, LS Jermiin Systematic biology 63 (5), 726-742, 2014 | 65 | 2014 |
| A minimum reporting standard for multiple sequence alignments TKF Wong, S Kalyaanamoorthy, K Meusemann, DK Yeates, B Misof, ... NAR genomics and bioinformatics 2 (2), lqaa024, 2020 | 47 | 2020 |
| Promoter-sharing by different genes in human genome – CPNE1 and RBM12 gene pair as an example W Yang, P Ng, M Zhao, TKF Wong, SM Yiu, YL Lau BMC genomics 9, 1-16, 2008 | 42 | 2008 |
| Structural alignment of RNA with complex pseudoknot structure TKF Wong, TW Lam, WK Sung, BWY Cheung, SM Yiu Journal of Computational Biology 18 (1), 97-108, 2011 | 30 | 2011 |
| SOAP3: GPU-based Compressed Indexing and Ultra-fast Parallel Alignment of Short Reads CM Liu, TW Lam, KF Wong, EMK Wu, SM Yiu, Z Li, R Luo, B Wang, C Yu, ... Third Workshop on Massive Data Algorithmics (MASSIVE 2011), 2011 | 24 | 2011 |
| Complete mitochondrial genome of the green-lipped mussel, Perna canaliculus (Mollusca: Mytiloidea), from long nanopore sequencing reads L Ranjard, TKF Wong, C Külheim, AG Rodrigo, NLC Ragg, S Patel, ... Mitochondrial DNA Part B 3 (1), 175-176, 2018 | 14 | 2018 |
| Memory efficient algorithms for structural alignment of RNAs with pseudoknots TKF Wong, YS Chiu, TW Lam, SM Yiu IEEE/ACM transactions on computational biology and bioinformatics 9 (1), 161-168, 2011 | 11 | 2011 |
| MAST: Phylogenetic inference with mixtures across sites and trees TKF Wong, C Cherryh, AG Rodrigo, MW Hahn, BQ Minh, R Lanfear Systematic Biology, syae008, 2024 | 9 | 2024 |
| RNASAlign: RNA structural alignment system TKF Wong, KL Wan, BY Hsu, BWY Cheung, WK Hon, TW Lam, SM Yiu Bioinformatics 27 (15), 2151-2152, 2011 | 8 | 2011 |
| DecentTree: scalable Neighbour-Joining for the genomic era W Wang, J Barbetti, T Wong, B Thornlow, R Corbett-Detig, Y Turakhia, ... Bioinformatics 39 (9), btad536, 2023 | 7 | 2023 |
| Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data X Hu, TKF Wong, ZJ Lu, TF Chan, TCK Lau, SM Yiu, KY Yip Bioinformatics 30 (8), 1049-1055, 2014 | 7 | 2014 |
| Structural alignment of RNA with triple helix structure TKF Wong, SM Yiu Journal of Computational Biology 19 (4), 365-378, 2012 | 7 | 2012 |
| Adjacent nucleotide dependence in ncRNA and order-1 SCFG for ncRNA identification TKF Wong, TW Lam, WK Sung, SM Yiu PLoS One 5 (9), e12848, 2010 | 6 | 2010 |
| A memory efficient algorithm for structural alignment of RNAs with embedded simple pseudoknots T Wong, YS Chiu, TW Lam, SM Yiu Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 89-99, 2008 | 6 | 2008 |
| Reassembling haplotypes in a mixture of pooled amplicons when the relative concentrations are known: A proof-of-concept study on the efficient design of next-generation … L Ranjard, TKF Wong, AG Rodrigo PLoS One 13 (4), e0195090, 2018 | 5 | 2018 |