| ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers BG Pierce, K Wiehe, H Hwang, BH Kim, T Vreven, Z Weng Bioinformatics 30 (12), 1771-1773, 2014 | 1717 | 2014 |
| Protein–protein docking benchmark version 4.0 H Hwang, T Vreven, J Janin, Z Weng Proteins: Structure, Function, and Bioinformatics 78 (15), 3111-3114, 2010 | 544 | 2010 |
| A structure‐based benchmark for protein–protein binding affinity PL Kastritis, IH Moal, H Hwang, Z Weng, PA Bates, AMJJ Bonvin, J Janin Protein Science 20 (3), 482-491, 2011 | 347 | 2011 |
| Protein–protein docking benchmark version 3.0 H Hwang, B Pierce, J Mintseris, J Janin, Z Weng Proteins: Structure, Function, and Bioinformatics 73 (3), 705-709, 2008 | 325 | 2008 |
| Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of molecular biology 414 (2), 289-302, 2011 | 158 | 2011 |
| Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ... Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013 | 114 | 2013 |
| Prediction of protein–protein binding free energies T Vreven, H Hwang, BG Pierce, Z Weng Protein Science 21 (3), 396-404, 2012 | 94 | 2012 |
| Integrating atom‐based and residue‐based scoring functions for protein–protein docking T Vreven, H Hwang, Z Weng Protein Science 20 (9), 1576-1586, 2011 | 94 | 2011 |
| Performance of ZDOCK and ZRANK in CAPRI rounds 13–19 H Hwang, T Vreven, BG Pierce, JH Hung, Z Weng Proteins: Structure, Function, and Bioinformatics 78 (15), 3104-3110, 2010 | 91 | 2010 |
| The performance of ZDOCK and ZRANK in rounds 6–11 of CAPRI K Wiehe, B Pierce, WW Tong, H Hwang, J Mintseris, Z Weng Proteins: Structure, Function, and Bioinformatics 69 (4), 719-725, 2007 | 79 | 2007 |
| Blind prediction of interfacial water positions in CAPRI MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ... Proteins: Structure, Function, and Bioinformatics 82 (4), 620-632, 2014 | 63 | 2014 |
| Structure-based prediction of ligand–protein interactions on a genome-wide scale H Hwang, F Dey, D Petrey, B Honig Proceedings of the National Academy of Sciences 114 (52), 13685-13690, 2017 | 56 | 2017 |
| A hybrid method for protein–protein interface prediction H Hwang, D Petrey, B Honig Protein Science 25 (1), 159-165, 2016 | 56 | 2016 |
| Template-based prediction of protein function D Petrey, TS Chen, L Deng, JI Garzon, H Hwang, G Lasso, H Lee, ... Current opinion in structural biology 32, 33-38, 2015 | 51 | 2015 |
| Evaluating template-based and template-free protein–protein complex structure prediction T Vreven, H Hwang, BG Pierce, Z Weng Briefings in bioinformatics 15 (2), 169-176, 2014 | 49 | 2014 |
| Binding interface prediction by combining protein–protein docking results H Hwang, T Vreven, Z Weng Proteins: Structure, Function, and Bioinformatics 82 (1), 57-66, 2014 | 38 | 2014 |
| Performance of ZDOCK in CAPRI rounds 20–26 T Vreven, BG Pierce, H Hwang, Z Weng Proteins: Structure, Function, and Bioinformatics 81 (12), 2175-2182, 2013 | 33 | 2013 |
| Exploring angular distance in protein-protein docking algorithms T Vreven, H Hwang, Z Weng PLoS One 8 (2), e56645, 2013 | 13 | 2013 |
| A machine learning approach for the prediction of protein surface loop flexibility H Hwang, T Vreven, TW Whitfield, K Wiehe, Z Weng Proteins: Structure, Function, and Bioinformatics 79 (8), 2467-2474, 2011 | 11 | 2011 |
| PrePCI: A structure‐and chemical similarity‐informed database of predicted protein compound interactions SJ Trudeau, H Hwang, D Mathur, K Begum, D Petrey, D Murray, B Honig Protein Science 32 (4), e4594, 2023 | 9 | 2023 |
Zhiping WengProf & Chair, Department of Genomics and Computational Biology, UMASS Medical SchoolVerified email at umassmed.edu
