| Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 797 | 2017 |
| Computational pan-genomics: status, promises and challenges Briefings in bioinformatics 19 (1), 118-135, 2018 | 355 | 2018 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 249 | 2022 |
| KIS SPLICE: de-novo calling alternative splicing events from RNA-seq data GAT Sacomoto, J Kielbassa, R Chikhi, R Uricaru, P Antoniou, MF Sagot, ... BMC bioinformatics 13, 1-12, 2012 | 129 | 2012 |
| Reference-free detection of isolated SNPs R Uricaru, G Rizk, V Lacroix, E Quillery, O Plantard, R Chikhi, C Lemaitre, ... Nucleic acids research 43 (2), e11-e11, 2015 | 120 | 2015 |
| Multiple comparative metagenomics using multiset k-mer counting G Benoit, P Peterlongo, M Mariadassou, E Drezen, S Schbath, D Lavenier, ... PeerJ Computer Science 2, e94, 2016 | 119 | 2016 |
| Read mapping on de Bruijn graphs A Limasset, B Cazaux, E Rivals, P Peterlongo BMC bioinformatics 17, 1-12, 2016 | 105 | 2016 |
| Fast and scalable minimal perfect hashing for massive key sets A Limasset, G Rizk, R Chikhi, P Peterlongo arXiv preprint arXiv:1702.03154, 2017 | 104 | 2017 |
| SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population G Boutet, S Alves Carvalho, M Falque, P Peterlongo, E Lhuillier, ... BMC genomics 17, 1-14, 2016 | 103 | 2016 |
| GATB: genome assembly & analysis tool box E Drezen, G Rizk, R Chikhi, C Deltel, C Lemaitre, P Peterlongo, ... Bioinformatics 30 (20), 2959-2961, 2014 | 95 | 2014 |
| Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems DJ Richter, R Watteaux, T Vannier, J Leconte, P Frémont, G Reygondeau, ... Elife 11, e78129, 2022 | 84 | 2022 |
| Compareads: comparing huge metagenomic experiments N Maillet, C Lemaitre, R Chikhi, D Lavenier, P Peterlongo BMC bioinformatics 13, 1-10, 2012 | 77 | 2012 |
| Cytosine methylation of mature microRNAs inhibits their functions and is associated with poor prognosis in glioblastoma multiforme M Cheray, A Etcheverry, C Jacques, R Pacaud, G Bougras-Cartron, ... Molecular cancer 19, 1-16, 2020 | 76 | 2020 |
| COMMET: comparing and combining multiple metagenomic datasets N Maillet, G Collet, T Vannier, D Lavenier, P Peterlongo 2014 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2014 | 61 | 2014 |
| Identifying SNPs without a reference genome by comparing raw reads P Peterlongo, N Schnel, N Pisanti, MF Sagot, V Lacroix String Processing and Information Retrieval: 17th International Symposium …, 2010 | 58 | 2010 |
| Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computer P Peterlongo, R Chikhi BMC bioinformatics 13, 1-14, 2012 | 55 | 2012 |
| Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs A Limasset, JF Flot, P Peterlongo Bioinformatics 36 (5), 1374-1381, 2020 | 47 | 2020 |
| DiscoSnp++: de novo detection of small variants from raw unassembled read set(s) P Peterlongo, C Riou, E Drezen, C Lemaitre BioRxiv, 209965, 2017 | 40 | 2017 |
| Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii V Loux, M Mariadassou, S Almeida, H Chiapello, A Hammani, J Buratti, ... BMC genomics 16, 1-19, 2015 | 40 | 2015 |
| Kmtricks: efficient and flexible construction of bloom filters for large sequencing data collections T Lemane, P Medvedev, R Chikhi, P Peterlongo Bioinformatics Advances 2 (1), vbac029, 2022 | 37 | 2022 |
Claire LemaitreGenscale, Inria center at Rennes UniversityVerified email at inria.fr