| Continuum molecular electrostatics, salt effects, and counterion binding—a review of the Poisson–Boltzmann theory and its modifications P Grochowski, J Trylska Biopolymers: Original Research on Biomolecules 89 (2), 93-113, 2008 | 328 | 2008 |
| Exploring global motions and correlations in the ribosome J Trylska, V Tozzini, JA McCammon Biophysical Journal 89 (3), 1455-1463, 2005 | 148 | 2005 |
| Flap opening dynamics in HIV-1 protease explored with a coarse-grained model V Tozzini, J Trylska, C Chang, JA McCammon Journal of structural biology 157 (3), 606-615, 2007 | 141 | 2007 |
| The influence of macromolecular crowding on HIV-1 protease internal dynamics DDL Minh, C Chang, J Trylska, V Tozzini, JA McCammon Journal of the American Chemical Society 128 (18), 6006-6007, 2006 | 113 | 2006 |
| HIV-1 protease substrate binding and product release pathways explored with coarse-grained molecular dynamics J Trylska, V Tozzini, AC Chia-en, JA McCammon Biophysical journal 92 (12), 4179-4187, 2007 | 99 | 2007 |
| Gated binding of ligands to HIV-1 protease: Brownian dynamics simulations in a coarse-grained model CE Chang, T Shen, J Trylska, V Tozzini, JA McCammon Biophysical journal 90 (11), 3880-3885, 2006 | 98 | 2006 |
| Coarse‐grained force field for the nucleosome from self‐consistent multiscaling K Voltz, J Trylska, V Tozzini, V Kurkal‐Siebert, J Langowski, J Smith Journal of Computational chemistry 29 (9), 1429-1439, 2008 | 94 | 2008 |
| The role of hydrogen bonding in the enzymatic reaction catalyzed by HIV‐1 protease J Trylska, P Grochowski, JA McCammon Protein science 13 (2), 513-528, 2004 | 91 | 2004 |
| Thermodynamic linkage between the binding of protons and inhibitors to HIV‐1 protease J Trylska, J Antosiewicz, M Geller, CN Hodge, RM Klabe, MS Head, ... Protein Science 8 (1), 180-195, 1999 | 86 | 1999 |
| Diffusion in crowded biological environments: applications of Brownian dynamics M Długosz, J Trylska BMC biophysics 4, 1-9, 2011 | 84 | 2011 |
| Electrostatic properties of cowpea chlorotic mottle virus and cucumber mosaic virus capsids R Konecny, J Trylska, F Tama, D Zhang, NA Baker, CL Brooks III, ... Biopolymers: Original Research on Biomolecules 82 (2), 106-120, 2006 | 84 | 2006 |
| Binding pathways of ligands to HIV‐1 protease: coarse‐grained and atomistic simulations CEA Chang, J Trylska, V Tozzini, J Andrew McCammon Chemical biology & drug design 69 (1), 5-13, 2007 | 83 | 2007 |
| Vitamin B12 as a carrier of peptide nucleic acid (PNA) into bacterial cells M Równicki, M Wojciechowska, AJ Wierzba, J Czarnecki, D Bartosik, ... Scientific reports 7 (1), 7644, 2017 | 73 | 2017 |
| Binding of aminoglycosidic antibiotics to the oligonucleotide A-site model and 30S ribosomal Subunit: Poisson− Boltzmann model, thermal denaturation, and fluorescence studies G Yang, J Trylska, Y Tor, JA McCammon Journal of medicinal chemistry 49 (18), 5478-5490, 2006 | 72 | 2006 |
| A New Role for Helicobacter pylori Urease: Contributions to Angiogenesis D Olivera-Severo, AF Uberti, MS Marques, MT Pinto, M Gomez-Lazaro, ... Frontiers in Microbiology 8, 1883, 2017 | 71 | 2017 |
| Unwrapping of nucleosomal DNA ends: a multiscale molecular dynamics study K Voltz, J Trylska, N Calimet, JC Smith, J Langowski Biophysical journal 102 (4), 849-858, 2012 | 69 | 2012 |
| Antibacterial peptide nucleic acids—facts and perspectives M Wojciechowska, M Równicki, A Mieczkowski, J Miszkiewicz, J Trylska Molecules 25 (3), 559, 2020 | 64 | 2020 |
| Dependency map of proteins in the small ribosomal subunit K Hamacher, J Trylska, JA McCammon PLoS Computational Biology 2 (2), e10, 2006 | 61 | 2006 |
| Brownian dynamics simulations on CPU and GPU with BD_BOX M Długosz, P Zieliński, J Trylska Journal of computational chemistry 32 (12), 2734-2744, 2011 | 60 | 2011 |
| Coarse-grained models to study dynamics of nanoscale biomolecules and their applications to the ribosome J Trylska Journal of Physics: Condensed Matter 22 (45), 453101, 2010 | 55 | 2010 |
Prof. J. Andrew McCammonUniversity of California, San DiegoVerified email at ucsd.edu