| MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph D Li, CM Liu, R Luo, K Sadakane, TW Lam Bioinformatics 31 (10), 1674-1676, 2015 | 6268 | 2015 |
| SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler R Luo, B Liu, Y Xie, Z Li, W Huang, J Yuan, G He, Y Chen, Q Pan, Y Liu, ... Gigascience 1 (1), 2047-217X-1-18, 2012 | 5067 | 2012 |
| SOAP2: an improved ultrafast tool for short read alignment R Li, C Yu, Y Li, TW Lam, SM Yiu, K Kristiansen, J Wang Bioinformatics 25 (15), 1966-1967, 2009 | 4171 | 2009 |
| MEGAHIT v1. 0: a fast and scalable metagenome assembler driven by advanced methodologies and community practices D Li, R Luo, CM Liu, CM Leung, HF Ting, K Sadakane, H Yamashita, ... Methods 102, 3-11, 2016 | 1444 | 2016 |
| The sequence and de novo assembly of the giant panda genome R Li, W Fan, G Tian, H Zhu, L He, J Cai, Q Huang, Q Cai, B Li, Y Bai, ... Nature 463 (7279), 311-317, 2010 | 1399 | 2010 |
| SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads Y Xie, G Wu, J Tang, R Luo, J Patterson, S Liu, W Huang, G He, S Gu, S Li, ... Bioinformatics 30 (12), 1660-1666, 2014 | 1026 | 2014 |
| Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013 | 815 | 2013 |
| Erratum: SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler R Luo, B Liu, Y Xie, Z Li, W Huang, J Yuan, G He, Y Chen, Q Pan, Y Liu, ... Gigascience 4, 1-1, 2015 | 337 | 2015 |
| SOAP3: ultra-fast GPU-based parallel alignment tool for short reads CM Liu, T Wong, E Wu, R Luo, SM Yiu, Y Li, B Wang, C Yu, X Chu, K Zhao, ... Bioinformatics 28 (6), 878-879, 2012 | 323 | 2012 |
| A multi-task convolutional deep neural network for variant calling in single molecule sequencing R Luo, FJ Sedlazeck, TW Lam, MC Schatz Nature communications 10 (1), 998, 2019 | 189 | 2019 |
| COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly B Liu, J Yuan, SM Yiu, Z Li, Y Xie, Y Chen, Y Shi, H Zhang, Y Li, TW Lam, ... Bioinformatics 28 (22), 2870-2874, 2012 | 189 | 2012 |
| Compressed indexing and local alignment of DNA TW Lam, WK Sung, SL Tam, CK Wong, SM Yiu Bioinformatics 24 (6), 791-797, 2008 | 180 | 2008 |
| SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner R Luo, T Wong, J Zhu, CM Liu, X Zhu, E Wu, LK Lee, H Lin, W Zhu, ... PloS one 8 (5), e65632, 2013 | 168 | 2013 |
| Symphonizing pileup and full-alignment for deep learning-based long-read variant calling Z Zheng, S Li, J Su, AWS Leung, TW Lam, R Luo Nature Computational Science 2 (12), 797-803, 2022 | 160 | 2022 |
| High throughput short read alignment via bi-directional BWT TW Lam, R Li, A Tam, S Wong, E Wu, SM Yiu 2009 IEEE International Conference on Bioinformatics and Biomedicine, 31-36, 2009 | 145 | 2009 |
| SOAPsplice: Genome-Wide ab initio Detection of Splice Junctions from RNA-Seq Data S Huang, J Zhang, R Li, W Zhang, Z He, TW Lam, Z Peng, SM Yiu Frontiers in genetics 2, 46, 2011 | 141 | 2011 |
| Renet: A deep learning approach for extracting gene-disease associations from literature Y Wu, R Luo, HCM Leung, HF Ting, TW Lam Research in Computational Molecular Biology: 23rd Annual International …, 2019 | 122 | 2019 |
| Scheduling for speed bounded processors N Bansal, HL Chan, TW Lam, LK Lee Automata, Languages and Programming: 35th International Colloquium, ICALP …, 2008 | 122 | 2008 |
| Energy efficient online deadline scheduling HL Chan, WT Chan, TW Lam, LK Lee, KS Mak, PWH Wong SODA 7, 795-804, 2007 | 122 | 2007 |
| Exploring the limit of using a deep neural network on pileup data for germline variant calling R Luo, CL Wong, YS Wong, CI Tang, CM Liu, CM Leung, TW Lam Nature Machine Intelligence 2 (4), 220-227, 2020 | 114 | 2020 |