Pavel Baranov, "Pasha"

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John F. AtkinsResearch Professor, University College Cork (UCC), IrelandVerified email at genetics.utah.edu
Audrey MichelUniversity College CorkVerified email at ucc.ie
g loughranVerified email at ucc.ie
Andrew E FirthUniversity of CambridgeVerified email at cam.ac.uk
Anmol KiranUniversity of Liverpool, Malawi-Liverpool-Wellcome Trust Clinical Research ProgrammeVerified email at liv.ac.uk
Ivaylo P IvanovNational Institutes of Health, Bethesda, MDVerified email at nih.gov
Martina Yordanovauniversity college corkVerified email at umail.ucc.ie
PapkovskyProfessor of Biochemistry, University College CorkVerified email at ucc.ie
Alexander V. ZhdanovUniversity College CorkVerified email at ucc.ie
Vadim GladyshevProfessor of Medicine, Brigham and Women's Hospital, Harvard Medical SchoolVerified email at rics.bwh.harvard.edu
Stephen HeaphyComputational Biology, University College CorkVerified email at umail.ucc.ie
Olivier FayetCNRSVerified email at ibcg.biotoul.fr
Virag SharmaDresden Concept Genome Center, TU DresdenVerified email at tu-dresden.de
James P A MullanVerified email at ucc.ie
Sergey DmitrievBelozersky Institute of Physico-Chemical Biology, Moscow State UniversityVerified email at belozersky.msu.ru
Ivan V. AntonovResearch Centre of Biotechnology RAS, Moscow, RussiaVerified email at gatech.edu
Mark BorodovskyRegents' Professor, Georgia TechVerified email at gatech.edu
Romika KumariPostdoctoral researcher, Institute for Molecular Medicine FinlandVerified email at helsinki.fi
alexey bogdanovНИИФХБ им. А.Н.Белозерского МГУVerified email at belozersky.msu.ru
Manolis KellisProfessor of Computer Science, MIT and Broad InstituteVerified email at mit.edu

Pavel Baranov, "Pasha"

Professor of Biomolecular Informatics, University College Cork, Ireland

Verified email at ucc.ie - Homepage

mRNA Genetic Code Ribosome profiling Protein Synthesis Translon


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Translation of 5′ leaders is pervasive in genes resistant to eIF2 repression DE Andreev, PBF O'Connor, C Fahey, EM Kenny, IM Terenin, SE Dmitriev, ... elife 4, e03971, 2015	389	2015
Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use JF Atkins, G Loughran, PR Bhatt, AE Firth, PV Baranov Nucleic acids research 44 (15), 7007-7078, 2016	356	2016
Programmed ribosomal frameshifting in decoding the SARS-CoV genome PV Baranov, CM Henderson, CB Anderson, RF Gesteland, JF Atkins, ... Virology 332 (2), 498-510, 2005	298	2005
Recoding: translational bifurcations in gene expression PV Baranov, RF Gesteland, JF Atkins Gene 286 (2), 187-201, 2002	272	2002
DARNED: a DAtabase of RNa EDiting in humans A Kiran, PV Baranov Bioinformatics 26 (14), 1772-1776, 2010	271	2010
Evidence of efficient stop codon readthrough in four mammalian genes G Loughran, MY Chou, IP Ivanov, I Jungreis, M Kellis, AM Kiran, ... Nucleic acids research 42 (14), 8928-8938, 2014	266	2014
Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences IP Ivanov, AE Firth, AM Michel, JF Atkins, PV Baranov Nucleic acids research 39 (10), 4220-4234, 2011	258	2011
GWIPS-viz: development of a ribo-seq genome browser AM Michel, G Fox, A M. Kiran, C De Bo, PBF O’Connor, SM Heaphy, ... Nucleic acids research 42 (D1), D859-D864, 2014	253	2014
Observation of dually decoded regions of the human genome using ribosome profiling data AM Michel, KR Choudhury, AE Firth, NT Ingolia, JF Atkins, PV Baranov Genome research 22 (11), 2219-2229, 2012	228	2012
Insights into the mechanisms of eukaryotic translation gained with ribosome profiling DE Andreev, PBF O'Connor, G Loughran, SE Dmitriev, PV Baranov, ... Nucleic acids research 45 (2), 513-526, 2017	175	2017
Pyrrolysine and selenocysteine use dissimilar decoding strategies Y Zhang, PV Baranov, JF Atkins, VN Gladyshev Journal of Biological Chemistry 280 (21), 20740-20751, 2005	174	2005
Standardized annotation of translated open reading frames JM Mudge, J Ruiz-Orera, JR Prensner, MA Brunet, F Calvet, I Jungreis, ... Nature biotechnology 40 (7), 994-999, 2022	173	2022
Retapamulin-assisted ribosome profiling reveals the alternative bacterial proteome S Meydan, J Marks, D Klepacki, V Sharma, PV Baranov, AE Firth, ... Molecular cell 74 (3), 481-493. e6, 2019	166	2019
Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes DE Andreev, PBF O’Connor, AV Zhdanov, RI Dmitriev, IN Shatsky, ... Genome biology 16, 1-14, 2015	147	2015
Comparative survey of the relative impact of mRNA features on local ribosome profiling read density PBF O’Connor, DE Andreev, PV Baranov Nature communications 7 (1), 12915, 2016	134	2016
The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 Å resolution F Mueller, I Sommer, P Baranov, R Matadeen, M Stoldt, J WoÈhnert, ... Journal of molecular biology 298 (1), 35-59, 2000	120	2000
eIF2α controls memory consolidation via excitatory and somatostatin neurons V Sharma, R Sood, A Khlaifia, MJ Eslamizade, TY Hung, D Lou, ... Nature 586 (7829), 412-416, 2020	119	2020
Darned in 2013: inclusion of model organisms and linking with Wikipedia AM Kiran, JJ O'Mahony, K Sanjeev, PV Baranov Nucleic acids research 41 (D1), D258-D261, 2012	117	2012
Novel Ciliate Genetic Code Variants Including the Reassignment of All Three Stop Codons to Sense Codons in Condylostoma magnum SM Heaphy, M Mariotti, VN Gladyshev, JF Atkins, PV Baranov Molecular biology and evolution 33 (11), 2885-2889, 2016	116	2016
Release factor 2 frameshifting sites in different bacteria PV Baranov, RF Gesteland, JF Atkins EMBO reports, 2002	116	2002

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