| A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013 | 1213 | 2013 |
| Genome-wide prediction of metabolic enzymes, pathways, and gene clusters in plants P Schläpfer, P Zhang, C Wang, T Kim, M Banf, L Chae, K Dreher, ... Plant physiology 173 (4), 2041-2059, 2017 | 363 | 2017 |
| Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major AK Chavali, JD Whittemore, JA Eddy, KT Williams, JA Papin Molecular systems biology 4 (1), 177, 2008 | 196 | 2008 |
| The application of flux balance analysis in systems biology EP Gianchandani, AK Chavali, JA Papin Wiley Interdisciplinary Reviews: Systems Biology and Medicine 2 (3), 372-382, 2010 | 195 | 2010 |
| A metabolic network approach for the identification and prioritization of antimicrobial drug targets AK Chavali*, KM D'Auria*, EL Hewlett, RD Pearson, JA Papin Trends in microbiology 20 (3), 113-123, 2012 | 133 | 2012 |
| Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites AK Chavali, SY Rhee Briefings in bioinformatics 19 (5), 1022-1034, 2018 | 123 | 2018 |
| Characterizing emergent properties of immunological systems with multi-cellular rule-based computational modeling AK Chavali*, EP Gianchandani*, KS Tung, MB Lawrence, SM Peirce, ... Trends in immunology 29 (12), 589-599, 2008 | 115 | 2008 |
| Metabolic network analysis integrated with transcript verification for sequenced genomes A Manichaikul, L Ghamsari, EFY Hom, C Lin, RR Murray, RL Chang, ... Nature methods 6 (8), 589-592, 2009 | 111 | 2009 |
| Flux balance analysis: interrogating genome-scale metabolic networks MA Oberhardt*, AK Chavali*, JA Papin Systems Biology, 61-80, 2009 | 78 | 2009 |
| Proteomic and network analysis characterize stage-specific metabolism in Trypanosoma cruzi SB Roberts, JL Robichaux, AK Chavali, PA Manque, V Lee, AM Lara, ... BMC systems biology 3, 1-15, 2009 | 61 | 2009 |
| Metabolic network analysis predicts efficacy of FDA-approved drugs targeting the causative agent of a neglected tropical disease AK Chavali, AS Blazier, JL Tlaxca, PA Jensen, RD Pearson, JA Papin BMC systems biology 6, 1-16, 2012 | 57 | 2012 |
| NF-κB-Chromatin Interactions Drive Diverse Phenotypes by Modulating Transcriptional Noise VC Wong, VL Bass*, ME Bullock*, AK Chavali*, REC Lee, W Mothes, ... Cell reports 22 (3), 585-599, 2018 | 53 | 2018 |
| Intestinal epithelial cell up-regulation of LY6 molecules during colitis results in enhanced chemokine secretion K Flanagan, Z Modrusan, J Cornelius, A Chavali, I Kasman, L Komuves, ... The Journal of Immunology 180 (6), 3874-3881, 2008 | 43 | 2008 |
| A passive-flow microfluidic device for imaging latent HIV activation dynamics in single T cells R Ramji*, VC Wong*, AK Chavali*, LM Gearhart, K Miller-Jensen Integrative Biology 7 (9), 998-1010, 2015 | 25 | 2015 |
| Distinct promoter activation mechanisms modulate noise-driven HIV gene expression AK Chavali, VC Wong, K Miller-Jensen Scientific Reports 5, 17661, 2015 | 21 | 2015 |
| Frugal innovation in bioengineering for the detection of infectious diseases AK Chavali, R Ramji Springer, 2018 | 15 | 2018 |
| Linking genome-scale metabolic modeling and genome annotation EM Blais, AK Chavali, JA Papin Systems Metabolic Engineering: Methods and Protocols, 61-83, 2013 | 15 | 2013 |
| Systems analysis of small signaling modules relevant to eight human diseases KF Benedict, F Mac Gabhann, RK Amanfu, AK Chavali, EP Gianchandani, ... Annals of biomedical engineering 39, 621-635, 2011 | 13 | 2011 |
| Supplementary material I AK Chavali, JD Whittemore, JA Eddy, KT Williams, JA Papin | 1 | 2015 |
| Moving clinical operations forward during a pandemic S Ramanathan, R Du, M Martin, A Chavali Applied Clinical Trials 29 (4), 2020 | | 2020 |
