Bogumil Kaczkowski

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Thomas LitmanUniversity of Copenhagen / LEO Pharma A/SVerified email at alumni.ku.dk
Ole WintherBiology, Univ of Copenhagen, Genomic Medicine, Rigshospitalet and Technical University of DenmarkVerified email at bio.ku.dk
Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Verified email at postman.riken.jp
Rolf SøkildeAarhus UniversityVerified email at clin.au.dk
Alistair ForrestSystems Biology and Genomics Lab, Harry Perkins Institute of Medical Research, UWAVerified email at perkins.uwa.edu.au
Hideya KawajiTokyo Metropolitan Institute of Medical ScienceVerified email at igakuken.or.jp
Timo LassmannThe Kids Research Institute Australia & University of Western AustraliaVerified email at telethonkids.org.au
Agnieszka PodolskaBiotech Research & Innovation Center (BRIC), University of Copenhagen (KU), DenmarkVerified email at bric.ku.dk
Susanna CireraLektor i Københavns Universitet, SUNDVerified email at sund.ku.dk
Nicolas RapindenmarkVerified email at ngc.dk
Bo PorseThe Finsen Laboratory, Rigshospitalet, University of CopenhagenVerified email at finsenlab.dk
Frederik Otzen BaggerUniversity of Cambridge and EMBL-EBIVerified email at ebi.ac.uk
Robin AnderssonUniversity of CopenhagenVerified email at bio.ku.dk
Albin SandelinThe Bioinformatics Centre, Department of Biology & BRIC, Copenhagen University, DenmarkVerified email at binf.ku.dk
Anders Jacobsen SkanderupGenome Institute of SingaporeVerified email at gis.a-star.edu.sg
harukazu suzukiGroup Director, RIKEN CLSTVerified email at gsc.riken.jp
Peter F StadlerProfessor of Bioinformatics, Univ. LeipzigVerified email at bioinf.uni-leipzig.de
Kristin Reiche (nee Missal)Head of Bioinformatics Research Unit, Fraunhofer Institute for Cell Therapy and Immunology, LeipzigVerified email at izi.fraunhofer.de
Jakob Hull HavgaardUniversity of CopenhagenVerified email at rth.dk
Peter K BuskBiotech consultantVerified email at ruc.dk

Bogumil Kaczkowski

AstraZeneca

Verified email at astrazeneca.com

Computational Biology Cancer Transcriptome Cancer Epigenome Bioinformatics


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Comprehensive molecular characterization of human colon and rectal cancer Cancer Genome Atlas Network Nature 487 (7407), 330, 2012	7878	2012
A promoter-level mammalian expression atlas Nature 507 (7493), 462-470, 2014	1814	2014
MicroRNAs and potential target interactions in psoriasis JR Zibert, MB Løvendorf, T Litman, J Olsen, B Kaczkowski, L Skov Journal of dermatological science 58 (3), 177-185, 2010	253	2010
The rectal cancer microRNAome–microRNA expression in rectal cancer and matched normal mucosa J Gaedcke, M Grade, J Camps, R Søkilde, B Kaczkowski, AJ Schetter, ... Clinical cancer research 18 (18), 4919-4930, 2012	219	2012
Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome research 30 (7), 1060-1072, 2020	159	2020
Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection S Roy, R Guler, SP Parihar, S Schmeier, B Kaczkowski, H Nishimura, ... The Journal of Immunology 194 (12), 6035-6044, 2015	119	2015
Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages S Roy, S Schmeier, B Kaczkowski, E Arner, T Alam, M Ozturk, O Tamgue, ... Scientific reports 8 (1), 6758, 2018	108	2018
Transcriptome analysis of recurrently deregulated genes across multiple cancers identifies new pan-cancer biomarkers. B Kaczkowski*, Y Tanaka, H Kawaji, A Sandelin, R Andersson, M Itoh, ... Cancer research 76 (2), 216-26, 2016	98	2016
HemaExplorer: a database of mRNA expression profiles in normal and malignant haematopoiesis FO Bagger, N Rapin, K Theilgaard-Mönch, B Kaczkowski, LA Thoren, ... Nucleic acids research 41 (D1), D1034-D1039, 2013	92	2013
Global microRNA analysis of the NCI-60 cancer cell panel R Søkildeª, B Kaczkowskiª, A Podolska, S Cirera, J Gorodkin, S Møller, ... Molecular cancer therapeutics 10 (3), 375-384, 2011	87	2011
Structural profiles of human miRNA families from pairwise clustering B Kaczkowskiª, E Torarinssonª, K Reiche, JH Havgaard, PF Stadler, ... Bioinformatics 25 (3), 291-294, 2008	79	2008
MicroRNA expression profiling of the porcine developing brain A Podolska, B Kaczkowski, P Kamp Busk, R Søkilde, T Litman, ... PloS one 6 (1), e14494, 2011	77	2011
CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors K Hashimoto, AM Suzuki, A Dos Santos, C Desterke, A Collino, S Ghisletti, ... Genome research 25 (12), 1812-1824, 2015	63	2015
Down-regulation of miR-129-5p and the let-7 family in neuroendocrine tumors and metastases leads to up-regulation of their targets Egr1, G3bp1, Hmga2 and Bach1 KBV Døssing, T Binderup, B Kaczkowski, A Jacobsen, M Rossing, ... Genes 6 (1), 1-21, 2014	58	2014
Cancers of unknown primary origin (CUP) are characterized by chromosomal instability (CIN) compared to metastasis of know origin J Vikesåª, AKH Møllerª, B Kaczkowskiª, R Borupª, O Winther, R Henao, ... BMC cancer 15 (1), 151, 2015	54	2015
How the RNA isolation method can affect microRNA microarray results. A Podolska, B Kaczkowski, T Litman, M Fredholm, S Cirera Acta Biochimica Polonica 58 (4), 2011	47	2011
Integrative analyses reveal novel strategies in HPV11,-16 and-45 early infection B Kaczkowski*, M Rossing, DK Andersen, A Dreher, M Morevati, ... Scientific reports 2, 2012	46	2012
HemaExplorer: a Web server for easy and fast visualization of gene expression in normal and malignant hematopoiesis FO Bagger, N Rapin, K Theilgaard-Mönch, B Kaczkowski, J Jendholm, ... Blood, The Journal of the American Society of Hematology 119 (26), 6394-6395, 2012	42	2012
JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states L Handokoª, B Kaczkowskiª, CC Hon, M Lizio, M Wakamori, T Matsuda, ... Epigenetics, 1-22, 2018	38	2018
Micro RNA expression analysis and M ultiplex ligation‐dependent probe amplification in metastatic and non‐metastatic uveal melanoma AC Larsen, L Holst, B Kaczkowski, MT Andersen, V Manfé, VD Siersma, ... Acta ophthalmologica 92 (6), 541-549, 2014	36	2014

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