Ivo Hofacker

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Peter F StadlerProfessor of Bioinformatics, Univ. LeipzigVerified email at bioinf.uni-leipzig.de
Christoph FlammAssociate Professor, Department of Theoretical Chemistry, University of ViennaVerified email at univie.ac.at
Stephan BernhartBioinformatik, Universitaet LeipzigVerified email at bioinf.uni-leipzig.de
Ronny LorenzVerified email at tbi.univie.ac.at
Peter SchusterProfessor der Chemie, Universität WienVerified email at tbi.univie.ac.at
Christian Höner zu SiederdissenUniversität JenaVerified email at uni-jena.de
Jana Schor (née Hertel)Dr. rer. nat.Verified email at ufz.de
Stefan WashietlComputer Science and Artificial Intelligence Lab, MITVerified email at mit.edu
Andrea TanzerMedical University of ViennaVerified email at univie.ac.at
Michael T. WolfingerPrincipal Investigator at University of Vienna / Founder & CEO at RNAForecastVerified email at univie.ac.at
Andreas R. GruberPaperpile LLCVerified email at paperpile.com
Sebastian WillProfessor of Bioinformatics, LIX, Ecole PolytechniqueVerified email at polytechnique.edu
Walter FontanaProfessor of Systems Biology, Harvard Medical SchoolVerified email at hms.harvard.edu
Rolf BackofenProfessor für Bioinformatik, Universität FreiburgVerified email at informatik.uni-freiburg.de
Manfred TackerUniversity of Applied Sciences, Vienna and Circular Analytics TK GmbHVerified email at fh-campuswien.ac.at
Fabian AmmanCeMMVerified email at meduniwien.ac.at
Thomas GingerasProfessor of Functional Genomics, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Kristin Reiche (nee Missal)Head of Bioinformatics Research Unit, Fraunhofer Institute for Cell Therapy and Immunology, LeipzigVerified email at izi.fraunhofer.de
Reidys ChristianUniversity of VirginiaVerified email at virginia.edu
Philipp Kapranov, PhDXiamen UniversityVerified email at xmu.edu.cn

Ivo Hofacker

University of Vienna

Verified email at tbi.univie.ac.at - Homepage

Bioinformatics RNA structure


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007	6090	2007
ViennaRNA Package 2.0 R Lorenz, SH Bernhart, C Höner zu Siederdissen, H Tafer, C Flamm, ... Algorithms for molecular biology 6, 1-14, 2011	4966	2011
RNA maps reveal new RNA classes and a possible function for pervasive transcription P Kapranov, J Cheng, S Dike, DA Nix, R Duttagupta, AT Willingham, ... Science 316 (5830), 1484-1488, 2007	2977	2007
Fast folding and comparison of RNA secondary structures IL Hofacker, W Fontana, PF Stadler, LS Bonhoeffer, M Tacker, P Schuster Monatshefte fur chemie 125, 167-167, 1994	2924	1994
Vienna RNA secondary structure server IL Hofacker Nucleic acids research 31 (13), 3429-3431, 2003	2782	2003
The vienna RNA websuite AR Gruber, R Lorenz, SH Bernhart, R Neuböck, IL Hofacker Nucleic acids research 36 (suppl_2), W70-W74, 2008	2596	2008
From sequences to shapes and back: a case study in RNA secondary structures P Schuster, W Fontana, PF Stadler, IL Hofacker Proceedings of the Royal Society of London. Series B: Biological Sciences …, 1994	1089	1994
Fast and reliable prediction of noncoding RNAs S Washietl, IL Hofacker, PF Stadler Proceedings of the National Academy of Sciences 102 (7), 2454-2459, 2005	867	2005
Secondary structure prediction for aligned RNA sequences IL Hofacker, M Fekete, PF Stadler Journal of molecular biology 319 (5), 1059-1066, 2002	829	2002
Complete suboptimal folding of RNA and the stability of secondary structures S Wuchty, W Fontana, IL Hofacker, P Schuster Biopolymers: Original Research on Biomolecules 49 (2), 145-165, 1999	771	1999
RNAalifold: improved consensus structure prediction for RNA alignments SH Bernhart, IL Hofacker, S Will, AR Gruber, PF Stadler BMC bioinformatics 9, 1-13, 2008	693	2008
Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering S Will, K Reiche, IL Hofacker, PF Stadler, R Backofen PLoS computational biology 3 (4), e65, 2007	601	2007
Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams P Kerpedjiev, S Hammer, IL Hofacker Bioinformatics 31 (20), 3377-3379, 2015	482	2015
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome S Washietl, IL Hofacker, M Lukasser, A Hüttenhofer, PF Stadler Nature biotechnology 23 (11), 1383-1390, 2005	479	2005
Thermodynamics of RNA–RNA binding U Mückstein, H Tafer, J Hackermüller, SH Bernhart, PF Stadler, ... Bioinformatics 22 (10), 1177-1182, 2006	438	2006
RNA folding at elementary step resolution C Flamm, W Fontana, IL Hofacker, P Schuster Rna 6 (3), 325-338, 2000	425	2000
RNAplex: a fast tool for RNA–RNA interaction search H Tafer, IL Hofacker Bioinformatics 24 (22), 2657-2663, 2008	422	2008
LocARNA-P: accurate boundary prediction and improved detection of structural RNAs S Will, T Joshi, IL Hofacker, PF Stadler, R Backofen Rna 18 (5), 900-914, 2012	402	2012
The expansion of the metazoan microRNA repertoire J Hertel, M Lindemeyer, K Missal, C Fried, A Tanzer, C Flamm, ... BMC genomics 7, 1-15, 2006	384	2006
RNA folding and combinatory landscapes W Fontana, PF Stadler, EG Bornberg-Bauer, T Griesmacher, IL Hofacker, ... Physical review E 47 (3), 2083, 1993	377	1993

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