| Signatures of mutational processes in human cancer LB Alexandrov nature 500 (7463), 415-21, 2013 | 10293 | 2013 |
| ViennaRNA Package 2.0 R Lorenz, SH Bernhart, C Höner zu Siederdissen, H Tafer, C Flamm, ... Algorithms for molecular biology 6, 1-14, 2011 | 4966 | 2011 |
| The vienna RNA websuite AR Gruber, R Lorenz, SH Bernhart, R Neuböck, IL Hofacker Nucleic acids research 36 (suppl_2), W70-W74, 2008 | 2596 | 2008 |
| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1938* | 2020 |
| The landscape of genomic alterations across childhood cancers SN Gröbner, BC Worst, J Weischenfeldt, I Buchhalter, K Kleinheinz, ... Nature 555 (7696), 321-327, 2018 | 1420 | 2018 |
| RNAalifold: improved consensus structure prediction for RNA alignments SH Bernhart, IL Hofacker, S Will, AR Gruber, PF Stadler BMC bioinformatics 9, 1-13, 2008 | 693 | 2008 |
| Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing Nature genetics 44 (12), 1316-1320, 2012 | 500 | 2012 |
| Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes A Donath, F Jühling, M Al-Arab, SH Bernhart, F Reinhardt, PF Stadler, ... Nucleic acids research 47 (20), 10543-10552, 2019 | 455 | 2019 |
| Thermodynamics of RNA–RNA binding U Mückstein, H Tafer, J Hackermüller, SH Bernhart, PF Stadler, ... Bioinformatics 22 (10), 1177-1182, 2006 | 438 | 2006 |
| Partition function and base pairing probabilities of RNA heterodimers SH Bernhart, H Tafer, U Mückstein, C Flamm, PF Stadler, IL Hofacker Algorithms for Molecular Biology 1, 1-10, 2006 | 349 | 2006 |
| Metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data F Jühling, H Kretzmer, SH Bernhart, C Otto, PF Stadler, S Hoffmann Genome research 26 (2), 256-262, 2016 | 337 | 2016 |
| Alignment of RNA base pairing probability matrices IL Hofacker, SHF Bernhart, PF Stadler Bioinformatics 20 (14), 2222-2227, 2004 | 320 | 2004 |
| Local RNA base pairing probabilities in large sequences SH Bernhart, IL Hofacker, PF Stadler Bioinformatics 22 (5), 614-615, 2006 | 284 | 2006 |
| Recurrent mTORC1-activating RRAGC mutations in follicular lymphoma J Okosun, RL Wolfson, J Wang, S Araf, L Wilkins, BM Castellano, ... Nature genetics 48 (2), 183-188, 2016 | 249 | 2016 |
| The ViennaRNA web services AR Gruber, SH Bernhart, R Lorenz RNA bioinformatics, 307-326, 2015 | 180 | 2015 |
| DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control H Kretzmer, SH Bernhart, W Wang, A Haake, MA Weniger, AK Bergmann, ... Nature genetics 47 (11), 1316-1325, 2015 | 148 | 2015 |
| Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering M Hackl, T Jakobi, J Blom, D Doppmeier, K Brinkrolf, R Szczepanowski, ... Journal of biotechnology 153 (1-2), 62-75, 2011 | 131 | 2011 |
| Genomic and transcriptomic changes complement each other in the pathogenesis of sporadic Burkitt lymphoma C López, K Kleinheinz, SM Aukema, M Rohde, SH Bernhart, ... Nature communications 10 (1), 1459, 2019 | 126 | 2019 |
| Changes of bivalent chromatin coincide with increased expression of developmental genes in cancer SH Bernhart, H Kretzmer, LM Holdt, F Jühling, O Ammerpohl, ... Scientific reports 6 (1), 37393, 2016 | 124 | 2016 |
| Variations on RNA folding and alignment: lessons from Benasque AF Bompfünewerer, R Backofen, SH Bernhart, J Hertel, IL Hofacker, ... Journal of mathematical biology 56, 129-144, 2008 | 117 | 2008 |
Peter F StadlerProfessor of Bioinformatics, Univ. LeipzigVerified email at bioinf.uni-leipzig.de
