Articles with public access mandates - Stephan BernhartLearn more
Not available anywhere: 4
Review
The ViennaRNA web services
AR Gruber, SH Bernhart, R Lorenz
RNA bioinformatics, 307-326, 2015
Mandates: Austrian Science Fund
Review
Deep sequencing of small RNAs confirms an annelid affinity of Myzostomida
C Helm, SH Bernhart, CH zu Siederdissen, B Nickel, C Bleidorn
Molecular Phylogenetics and Evolution 64 (1), 198-203, 2012
Mandates: German Research Foundation
Review
A probabilistic version of Sankoff’s maximum parsimony algorithm
G Balogh, SH Bernhart, PF Stadler, J Schor
Journal of bioinformatics and computational biology 18 (01), 2050004, 2020
Mandates: Federal Ministry of Education and Research, Germany
Review
RNAs Everywhere
R Backofen, A Mosig, SJ Prohaska, D Rose, PF Stadler, A Tanzer, ...
Mandates: German Research Foundation
Available somewhere: 63
Review
Signatures of mutational processes in human cancer
LB Alexandrov
nature 500 (7463), 415-21, 2013
Mandates: US National Institutes of Health, Wellcome Trust
Review
ViennaRNA Package 2.0
R Lorenz, SH Bernhart, C Höner zu Siederdissen, H Tafer, C Flamm, ...
Algorithms for molecular biology 6, 1-14, 2011
Mandates: Austrian Science Fund, German Research Foundation
Review
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
Mandates: US National Institutes of Health, Cancer Research UK, UK Medical Research …
Review
The landscape of genomic alterations across childhood cancers
SN Gröbner, BC Worst, J Weischenfeldt, I Buchhalter, K Kleinheinz, ...
Nature 555 (7696), 321-327, 2018
Mandates: European Commission, Federal Ministry of Education and Research, Germany
Review
RNAalifold: improved consensus structure prediction for RNA alignments
SH Bernhart, IL Hofacker, S Will, AR Gruber, PF Stadler
BMC bioinformatics 9, 1-13, 2008
Mandates: German Research Foundation
Review
Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing
Nature genetics 44 (12), 1316-1320, 2012
Mandates: German Research Foundation
Review
Thermodynamics of RNA–RNA binding
U Mückstein, H Tafer, J Hackermüller, SH Bernhart, PF Stadler, ...
Bioinformatics 22 (10), 1177-1182, 2006
Mandates: German Research Foundation
Review
Partition function and base pairing probabilities of RNA heterodimers
SH Bernhart, H Tafer, U Mückstein, C Flamm, PF Stadler, IL Hofacker
Algorithms for Molecular Biology 1, 1-10, 2006
Mandates: German Research Foundation
Review
Local RNA base pairing probabilities in large sequences
SH Bernhart, IL Hofacker, PF Stadler
Bioinformatics 22 (5), 614-615, 2006
Mandates: German Research Foundation
Review
Recurrent mTORC1-activating RRAGC mutations in follicular lymphoma
J Okosun, RL Wolfson, J Wang, S Araf, L Wilkins, BM Castellano, ...
Nature genetics 48 (2), 183-188, 2016
Mandates: US National Institutes of Health, Howard Hughes Medical Institute, Blood …
Review
DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control
H Kretzmer, SH Bernhart, W Wang, A Haake, MA Weniger, AK Bergmann, ...
Nature genetics 47 (11), 1316-1325, 2015
Mandates: Wellcome Trust
Review
Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
M Hackl, T Jakobi, J Blom, D Doppmeier, K Brinkrolf, R Szczepanowski, ...
Journal of biotechnology 153 (1-2), 62-75, 2011
Mandates: Austrian Science Fund
Review
Genomic and transcriptomic changes complement each other in the pathogenesis of sporadic Burkitt lymphoma
C López, K Kleinheinz, SM Aukema, M Rohde, SH Bernhart, ...
Nature communications 10 (1), 1459, 2019
Mandates: Swiss National Science Foundation, European Molecular Biology Laboratory …
Review
Changes of bivalent chromatin coincide with increased expression of developmental genes in cancer
SH Bernhart, H Kretzmer, LM Holdt, F Jühling, O Ammerpohl, ...
Scientific reports 6 (1), 37393, 2016
Mandates: German Research Foundation, Federal Ministry of Education and Research, Germany
Review
Variations on RNA folding and alignment: lessons from Benasque
AF Bompfünewerer, R Backofen, SH Bernhart, J Hertel, IL Hofacker, ...
Journal of mathematical biology 56, 129-144, 2008
Mandates: German Research Foundation
Review
MINCR is a MYC-induced lncRNA able to modulate MYC’s transcriptional network in Burkitt lymphoma cells
G Doose, A Haake, SH Bernhart, C López, S Duggimpudi, F Wojciech, ...
Proceedings of the National Academy of Sciences 112 (38), E5261-E5270, 2015
Mandates: German Research Foundation
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