| Chromosome-scale shotgun assembly using an in vitro method for long-range linkage NH Putnam, BL O'Connell, JC Stites, BJ Rice, M Blanchette, R Calef, ... Genome research 26 (3), 342-350, 2016 | 782 | 2016 |
| A ligation-based single-stranded library preparation method to analyze cell-free DNA and synthetic oligos CJ Troll, J Kapp, V Rao, KM Harkins, C Cole, C Naughton, JM Morgan, ... BMC genomics 20, 1-14, 2019 | 65 | 2019 |
| Methods for genome assembly, haplotype phasing, and target independent nucleic acid detection RE Green, P Hartley, C Troll, EE Min US Patent 10,457,934, 2019 | 50 | 2019 |
| Roles of DNA polymerase I in leading and lagging-strand replication defined by a high-resolution mutation footprint of ColE1 plasmid replication JM Allen, DM Simcha, NG Ericson, DL Alexander, JT Marquette, ... Nucleic acids research 39 (16), 7020-7033, 2011 | 31 | 2011 |
| Random Mutagenesis by Error-Prone Pol Plasmid Replication in Escherichia coli DL Alexander, J Lilly, J Hernandez, J Romsdahl, CJ Troll, M Camps Directed Evolution Library Creation: Methods and Protocols, 31-44, 2014 | 19 | 2014 |
| Structural variation detection by proximity ligation from formalin-fixed, paraffin-embedded tumor tissue CJ Troll, NH Putnam, PD Hartley, B Rice, M Blanchette, S Siddiqui, ... The Journal of Molecular Diagnostics 21 (3), 375-383, 2019 | 18 | 2019 |
| A novel NGS library preparation method to characterize native termini of fragmented DNA KM Harkins, NK Schaefer, CJ Troll, V Rao, J Kapp, C Naughton, ... Nucleic acids research 48 (8), e47-e47, 2020 | 14 | 2020 |
| Mutagenesis and functional selection protocols for directed evolution of proteins in E. coli C Troll, D Alexander, J Allen, J Marquette, M Camps Journal of visualized experiments: JoVE, 2505, 2011 | 14 | 2011 |
| The mutagenic footprint of low-fidelity Pol I ColE1 plasmid replication in E. coli reveals an extensive interplay between Pol I and Pol III C Troll, J Yoder, D Alexander, J Hernández, Y Loh, M Camps Current genetics 60, 123-134, 2014 | 12 | 2014 |
| Recovering long-range linkage information from preserved samples CJ Troll, MP Powers, NH Putnam, M Blanchette, P Hartley US Patent 10,947,579, 2021 | 7 | 2021 |
| Methods for genome assembly, haplotype phasing, and target independent nucleic acid detection RE Green, P Hartley, CJ Troll, EE Min US Patent App. 16/562,312, 2020 | 6 | 2020 |
| Interplay between base excision repair activity and toxicity of 3-methyladenine DNA glycosylases in an E. coli complementation system CJ Troll, S Adhikary, M Cueff, I Mitra, BF Eichman, M Camps Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 763, 64-73, 2014 | 5 | 2014 |
| Structural variant analysis NH Putnam, CJ Troll US Patent App. 16/762,619, 2020 | 2 | 2020 |
| Inert splint-driven oligonucleotide assembly AA Mishin, T Groth, RE Green, CJ Troll Synthetic Biology 9 (1), ysae019, 2024 | | 2024 |
| Methods and compositions for analyzing nucleic acid J Christopher, V Rao US Patent App. 18/011,271, 2023 | | 2023 |
| Methods and compositions for analyzing nucleic acid KMH KINCAID, J Christopher US Patent 11,584,929, 2023 | | 2023 |
| Methods and compositions for analyzing nucleic acid KMH KINCAID, CP Naughton, V Rao, J Christopher US Patent App. 17/440,386, 2022 | | 2022 |
| Sample prep for dna linkage recovery M Blanchette, CJ Troll US Patent App. 16/966,354, 2020 | | 2020 |
| Recovering long-range linkage information from preserved samples CJ Troll, MP Powers, NH Putnam, M Blanchette, P Hartley | | 2017 |
| Preservation of Long-Range Sequence and Phasing Information from FFPE Samples Using a Novel in Situ Digestion and Ligation Protocol MP Powers, S Balakrishnan, R Calef, P Hartley, J Stites, C Troll, ... JOURNAL OF MOLECULAR DIAGNOSTICS 18 (6), 1041-1041, 2016 | | 2016 |
