| The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models M Hucka, A Finney, HM Sauro, H Bolouri, JC Doyle, H Kitano, AP Arkin, ... Bioinformatics 19 (4), 524-531, 2003 | 3856 | 2003 |
| A genomic regulatory network for development EH Davidson, JP Rast, P Oliveri, A Ransick, C Calestani, CH Yuh, ... science 295 (5560), 1669-1678, 2002 | 1822 | 2002 |
| Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4 M Gilchrist, V Thorsson, B Li, AG Rust, M Korb, K Kennedy, T Hai, ... Nature 441 (7090), 173-178, 2006 | 899 | 2006 |
| Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene CH Yuh, H Bolouri, EH Davidson Science 279 (5358), 1896-1902, 1998 | 844 | 1998 |
| Mutsuki Amano K Bettenbrock, H Bolouri, D Bray, J Bruck, J Doyle, A Finney, ED Gilles, ... | 779 | 2001 |
| The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions H Bolouri, JE Farrar, T Triche Jr, RE Ries, EL Lim, TA Alonzo, Y Ma, ... Nature medicine 24 (1), 103-112, 2018 | 741 | 2018 |
| Substantial interindividual and limited intraindividual genomic diversity among tumors from men with metastatic prostate cancer A Kumar, I Coleman, C Morrissey, X Zhang, LD True, R Gulati, R Etzioni, ... Nature medicine 22 (4), 369-378, 2016 | 729 | 2016 |
| Computational modeling of genetic and biochemical networks JM Bower, H Bolouri MIT press, 2001 | 626 | 2001 |
| A data integration methodology for systems biology D Hwang, AG Rust, S Ramsey, JJ Smith, DM Leslie, AD Weston, ... Proceedings of the National Academy of Sciences 102 (48), 17296-17301, 2005 | 389 | 2005 |
| A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo EH Davidson, JP Rast, P Oliveri, A Ransick, C Calestani, CH Yuh, ... Developmental biology 246 (1), 162-190, 2002 | 381 | 2002 |
| Modeling transcriptional regulatory networks H Bolouri, EH Davidson BioEssays 24 (12), 1118-1129, 2002 | 376 | 2002 |
| Mutant IDH1 regulates the tumor-associated immune system in gliomas NM Amankulor, Y Kim, S Arora, J Kargl, F Szulzewsky, M Hanke, ... Genes & development 31 (8), 774-786, 2017 | 375 | 2017 |
| Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration HM Sauro, M Hucka, A Finney, C Wellock, H Bolouri, J Doyle, H Kitano Omics A Journal of Integrative Biology 7 (4), 355-372, 2003 | 348 | 2003 |
| Dizzy: stochastic simulation of large-scale genetic regulatory networks S Ramsey, D Orrell, H Bolouri Journal of bioinformatics and computational biology 3 (02), 415-436, 2005 | 307 | 2005 |
| Robustness as a measure of plausibility in models of biochemical networks M Morohashi, AE Winn, MT Borisuk, H Bolouri, J Doyle, H Kitano Journal of theoretical biology 216 (1), 19-30, 2002 | 294 | 2002 |
| Computational representation of developmental genetic regulatory networks WJR Longabaugh, EH Davidson, H Bolouri Developmental biology 283 (1), 1-16, 2005 | 253 | 2005 |
| Cis-regulatory logic in the endo16 gene: switching from a specification to a differentiation mode of control CH Yuh, H Bolouri, EH Davidson Development 128 (5), 617-629, 2001 | 249 | 2001 |
| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 238 | 2020 |
| Transcriptional regulatory cascades in development: initial rates, not steady state, determine network kinetics H Bolouri, EH Davidson Proceedings of the National Academy of Sciences 100 (16), 9371-9376, 2003 | 236 | 2003 |
| Genome-wide CRISPR-Cas9 screens reveal loss of redundancy between PKMYT1 and WEE1 in glioblastoma stem-like cells CM Toledo, Y Ding, P Hoellerbauer, RJ Davis, R Basom, EJ Girard, E Lee, ... Cell reports 13 (11), 2425-2439, 2015 | 186 | 2015 |
Alistair RustComputational Biologist, GSKVerified email at gsk.com