| The proteomes of human parotid and submandibular/sublingual gland salivas collected as the ductal secretions P Denny, FK Hagen, M Hardt, L Liao, W Yan, M Arellanno, S Bassilian, ... Journal of proteome research 7 (5), 1994-2006, 2008 | 551 | 2008 |
| ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity T Xu, SK Park, JD Venable, JA Wohlschlegel, JK Diedrich, D Cociorva, ... Journal of proteomics 129, 16-24, 2015 | 476 | 2015 |
| A quantitative analysis software tool for mass spectrometry–based proteomics SK Park, JD Venable, T Xu, JR Yates III Nature methods 5 (4), 319-322, 2008 | 444 | 2008 |
| Quantitative mass spectrometry identifies insulin signaling targets in C. elegans MQ Dong, JD Venable, N Au, T Xu, SK Park, D Cociorva, JR Johnson, ... Science 317 (5838), 660, 2007 | 380 | 2007 |
| Extremely Long-Lived Nuclear Pore Proteins in the Rat Brain JN Savas, BH Toyama, T Xu, JR Yates, MW Hetzer Science, 2012 | 335 | 2012 |
| ProLuCID, a fast and sensitive tandem mass spectra-based protein identification program T Xu, JD Venable, SK Park, D Cociorva, B Lu, L Liao, J Wohlschlegel, ... Molecular Cellular Proteomics 5, 2006 | 262 | 2006 |
| Proteomic analysis of Schistosoma mansoni egg secretions CL Cass, JR Johnson, LL Califf, T Xu, HJ Hernandez, MJ Stadecker, ... Molecular and biochemical parasitology 155 (2), 84-93, 2007 | 248 | 2007 |
| Calcium Signaling through CaMKII Regulates Hepatic Glucose Production in Fasting and Obesity L Ozcan, CCL Wong, G Li, T Xu, U Pajvani, SKR Park, A Wronska, ... Cell Metabolism, 2012 | 241 | 2012 |
| Atlas–a data warehouse for integrative bioinformatics SP Shah, Y Huang, T Xu, MMS Yuen, J Ling, BFF Ouellette BMC bioinformatics 6, 1-16, 2005 | 241 | 2005 |
| Quantitative proteomics approach for identifying protein–drug interactions in complex mixtures using protein stability measurements GM West, CL Tucker, T Xu, SK Park, X Han, JR Yates III, MC Fitzgerald Proceedings of the National Academy of Sciences 107 (20), 9078-9082, 2010 | 225 | 2010 |
| Anion and cation mixed-bed ion exchange for enhanced multidimensional separations of peptides and phosphopeptides A Motoyama, T Xu, CI Ruse, JA Wohlschlegel, JR Yates III Analytical chemistry 79 (10), 3623-3634, 2007 | 209 | 2007 |
| Quantitative proteomic analysis of primary neurons reveals diverse changes in synaptic protein content in fmr1 knockout mice L Liao, SK Park, T Xu, P Vanderklish, JR Yates III Proceedings of the National Academy of Sciences 105 (40), 15281-15286, 2008 | 203 | 2008 |
| Human Proteinpedia enables sharing of human protein data S Mathivanan, M Ahmed, NG Ahn, H Alexandre, R Amanchy, PC Andrews, ... Nature biotechnology 26 (2), 164-167, 2008 | 180 | 2008 |
| Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis GT Cantin, W Yi, B Lu, SK Park, T Xu, JD Lee, JR Yates Iii Journal of proteome research 7 (3), 1346-1351, 2008 | 178 | 2008 |
| Global analysis of posttranslational protein arginylation CCL Wong, T Xu, R Rai, AO Bailey, JR Yates 3rd, YI Wolf, H Zebroski, ... PLoS biology 5 (10), e258, 2007 | 156 | 2007 |
| Search Engine Processor: filtering and organizing PSMs PC Carvalho, JSG Fischer, T Xu, D Cociorva, TS Balbuena, RH Valente, ... Proteomics, 2012 | 136 | 2012 |
| BDNF induces widespread changes in synaptic protein content and up-regulates components of the translation machinery: an analysis using high-throughput proteomics L Liao, J Pilotte, T Xu, CCL Wong, GM Edelman, P Vanderklish, ... Journal of Proteome Research 6 (3), 1059-1071, 2007 | 127 | 2007 |
| XDIA: improving on the label-free data-independent analysis PC Carvalho, X Han, T Xu, D Cociorva, M da Gloria Carvalho, ... Bioinformatics 26 (6), 847-848, 2010 | 126 | 2010 |
| A cell cycle phosphoproteome of the yeast centrosome JM Keck, MH Jones, CCL Wong, J Binkley, D Chen, SL Jaspersen, ... Science 332 (6037), 1557-1561, 2011 | 123 | 2011 |
| Digestion and depletion of abundant proteins improves proteomic coverage BR Fonslow, BD Stein, KJ Webb, T Xu, J Choi, SK Park, JR Yates III Nature Methods 10 (1), 54-56, 2012 | 120 | 2012 |
John YatesErnest W. Hahn Professor @ The Scripps Research InstituteVerified email at scripps.edu