| A common open representation of mass spectrometry data and its application to proteomics research PGA Pedrioli, JK Eng, R Hubley, M Vogelzang, EW Deutsch, B Raught, ... Nature biotechnology 22 (11), 1459-1466, 2004 | 986 | 2004 |
| Activation of the canonical IKK complex by K63/M1-linked hybrid ubiquitin chains CH Emmerich, A Ordureau, S Strickson, JSC Arthur, PGA Pedrioli, ... Proceedings of the National Academy of Sciences 110 (38), 15247-15252, 2013 | 510 | 2013 |
| Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast B Bodenmiller, S Wanka, C Kraft, J Urban, D Campbell, PG Pedrioli, ... Science signaling 3 (153), rs4-rs4, 2010 | 380 | 2010 |
| A high-quality catalog of the Drosophila melanogaster proteome E Brunner, CH Ahrens, S Mohanty, H Baetschmann, S Loevenich, ... Nature biotechnology 25 (5), 576-583, 2007 | 326 | 2007 |
| Ubiquitin-related modifier Urm1 acts as a sulphur carrier in thiolation of eukaryotic transfer RNA S Leidel, PGA Pedrioli, T Bucher, R Brost, M Costanzo, A Schmidt, ... Nature 458 (7235), 228-232, 2009 | 325 | 2009 |
| Phosphorylation of CRTC3 by the salt-inducible kinases controls the interconversion of classically activated and regulatory macrophages K Clark, KF MacKenzie, K Petkevicius, Y Kristariyanto, J Zhang, HG Choi, ... Proceedings of the National Academy of Sciences 109 (42), 16986-16991, 2012 | 294 | 2012 |
| PGE2 induces macrophage IL-10 production and a regulatory-like phenotype via a protein kinase A–SIK–CRTC3 pathway KF MacKenzie, K Clark, S Naqvi, VA McGuire, G Nöehren, Y Kristariyanto, ... The Journal of Immunology 190 (2), 565-577, 2013 | 280 | 2013 |
| The IkappaB kinase family phosphorylates the Parkinson’s disease kinase LRRK2 at Ser935 and Ser910 during Toll-like receptor signaling N Dzamko, F Inesta-Vaquera, J Zhang, C Xie, H Cai, S Arthur, L Tan, ... PloS one 7 (6), e39132, 2012 | 240 | 2012 |
| Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses G Rosenberger, I Bludau, U Schmitt, M Heusel, CL Hunter, Y Liu, ... Nature methods 14 (9), 921-927, 2017 | 230 | 2017 |
| PhosphoPep—a phosphoproteome resource for systems biology research in Drosophila Kc167 cells B Bodenmiller, J Malmstrom, B Gerrits, D Campbell, H Lam, A Schmidt, ... Molecular systems biology 3 (1), 139, 2007 | 223 | 2007 |
| Trans-proteomic pipeline: a pipeline for proteomic analysis PGA Pedrioli Proteome Bioinformatics, 213-238, 2009 | 189 | 2009 |
| tRNA tKUUU, tQUUG, and tEUUC wobble position modifications fine-tune protein translation by promoting ribosome A-site binding VAN Rezgui, K Tyagi, N Ranjan, AL Konevega, J Mittelstaet, MV Rodnina, ... Proceedings of the National Academy of Sciences 110 (30), 12289-12294, 2013 | 176 | 2013 |
| Phosphorylation of Parkin at Serine65 is essential for activation: elaboration of a Miro1 substrate-based assay of Parkin E3 ligase activity A Kazlauskaite, V Kelly, C Johnson, C Baillie, CJ Hastie, M Peggie, ... Open biology 4 (3), 130213, 2014 | 155 | 2014 |
| Automated identification of SUMOylation sites using mass spectrometry and SUMmOn pattern recognition software PGA Pedrioli, B Raught, XD Zhang, R Rogers, J Aitchison, M Matunis, ... Nature methods 3 (7), 533-539, 2006 | 152 | 2006 |
| The SysteMHC atlas project W Shao, PGA Pedrioli, W Wolski, C Scurtescu, E Schmid, JA Vizcaíno, ... Nucleic acids research 46 (D1), D1237-D1247, 2018 | 151 | 2018 |
| Ubiquitylation-dependent localization of PLK1 in mitosis J Beck, S Maerki, M Posch, T Metzger, A Persaud, H Scheel, K Hofmann, ... Nature cell biology 15 (4), 430-439, 2013 | 126 | 2013 |
| The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support A Irmisch, X Bonilla, S Chevrier, KV Lehmann, F Singer, NC Toussaint, ... Cancer cell 39 (3), 288-293, 2021 | 119 | 2021 |
| A tool to visualize and evaluate data obtained by liquid chromatography-electrospray ionization-mass spectrometry X Li, PGA Pedrioli, J Eng, D Martin, EC Yi, H Lee, R Aebersold Analytical Chemistry 76 (13), 3856-3860, 2004 | 113 | 2004 |
| Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial J Čuklina, CH Lee, EG Williams, T Sajic, BC Collins, ... Molecular systems biology 17 (8), e10240, 2021 | 112 | 2021 |
| An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells B Bodenmiller, LN Mueller, PGA Pedrioli, D Pflieger, MA Jünger, JK Eng, ... Molecular BioSystems 3 (4), 275-286, 2007 | 95 | 2007 |
Aebersold RETH ZurichVerified email at imsb.biol.ethz.ch