Jens Keilwagen

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Jan GrauWissenschaftlicher Mitarbeiter, Bioinformatik, Martin Luther University Halle-WittenbergVerified email at informatik.uni-halle.de
Ivo GrosseProfessor of Bioinformatics, Martin Luther University Halle-WittenbergVerified email at informatik.uni-halle.de
Dragan PerovicDrVerified email at julius-kuehn.de
Michael SeifertGroup leader, IMB TU DresdenVerified email at tu-dresden.de
Andreas BörnerVerified email at ipk-gatersleben.de
Andreas GranerLeibniz Institute of Plant Genetics and Crop Plant Research (IPK)Verified email at ipk-gatersleben.de
Hakan ÖZKANUniversity of ÇukurovaVerified email at cu.edu.tr
Ekaterina BadaevaN.I. Vavilov Institute of General GeneticsVerified email at vigg.ru
Bernd WeisshaarBielefeld University, Faculty of Biology & Center for Biotechnology - CeBiTecVerified email at uni-bielefeld.de
Nima AghaeepourStanford UniversityVerified email at stanford.edu
Richard H. ScheuermannJ. Craig Venter InstituteVerified email at jcvi.org
Ryan BrinkmanBritish Columbia Cancer AgencyVerified email at bccrc.ca
Matthew T. WeirauchProfessor, Cincinnati Children's HospitalVerified email at cchmc.org
Raquel NorelResearch Staff Member, IBMVerified email at us.ibm.com
Gustavo StolovitzkyDirector, Biomed Data Sciences Hub, NYU Langone Health; Prof. Pathology Dep, NYU School of MedicineVerified email at nyulangone.org
Timothy R. HughesUniversity of TorontoVerified email at utoronto.ca
Martin GanalSGS INSTITUT FRESENIUS GmbH, GaterslebenVerified email at sgs.com
Yusheng ZhaoLeibniz Institute of Plant Genetics and Crop Plant Research (IPK)Verified email at ipk-gatersleben.de
Jochen Christoph ReifLeibniz Institute of Plant Genetics and Crop Plant Research (IPK)Verified email at ipk-gatersleben.de
Nils SteinLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466 StadtVerified email at ipk-gatersleben.de

Jens Keilwagen

Julius Kuehn-Institute

Verified email at julius-kuehn.de

Bioinformatics Sequence analysis Gene Prediction Machine Learning Statistics


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Shifting the limits in wheat research and breeding using a fully annotated reference genome International Wheat Genome Sequencing Consortium (IWGSC), R Appels, ... Science 361 (6403), eaar7191, 2018	2652	2018
Critical assessment of automated flow cytometry data analysis techniques N Aghaeepour, G Finak, H Hoos, TR Mosmann, R Brinkman, R Gottardo, ... Nature methods 10 (3), 228-238, 2013	683	2013
Using intron position conservation for homology-based gene prediction J Keilwagen, M Wenk, JL Erickson, MH Schattat, J Grau, F Hartung Nucleic acids research 44 (9), e89-e89, 2016	571	2016
Evaluation of methods for modeling transcription factor sequence specificity MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ... Nature biotechnology 31 (2), 126-134, 2013	421	2013
PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R J Grau, I Grosse, J Keilwagen Bioinformatics 31 (15), 2595-2597, 2015	373	2015
GeMoMa: homology-based gene prediction utilizing intron position conservation and RNA-seq data J Keilwagen, F Hartung, J Grau Gene prediction: Methods and protocols, 161-177, 2019	315	2019
Combining RNA-seq data and homology-based gene prediction for plants, animals and fungi J Keilwagen, F Hartung, M Paulini, SO Twardziok, J Grau BMC bioinformatics 19, 1-12, 2018	281	2018
Area under precision-recall curves for weighted and unweighted data J Keilwagen, I Grosse, J Grau PloS one 9 (3), e92209, 2014	222	2014
Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential MT Rabanus-Wallace, B Hackauf, M Mascher, T Lux, T Wicker, ... Nature genetics 53 (4), 564-573, 2021	216	2021
Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon G Mönke, M Seifert, J Keilwagen, M Mohr, I Grosse, U Hähnel, A Junker, ... Nucleic acids research 40 (17), 8240-8254, 2012	194	2012
Elongation‐related functions of LEAFY COTYLEDON1 during the development of Arabidopsis thaliana A Junker, G Mönke, T Rutten, J Keilwagen, M Seifert, TMN Thi, JP Renou, ... The Plant Journal 71 (3), 427-442, 2012	160	2012
Detection and identification of genome editing in plants: challenges and opportunities L Grohmann, J Keilwagen, N Duensing, E Dagand, F Hartung, R Wilhelm, ... Frontiers in Plant Science 10, 236, 2019	140	2019
Which factors affect the occurrence of off-target effects caused by the use of CRISPR/Cas: a systematic review in plants D Modrzejewski, F Hartung, H Lehnert, T Sprink, C Kohl, J Keilwagen, ... Frontiers in plant science 11, 574959, 2020	124	2020
Accurate prediction of cell type-specific transcription factor binding J Keilwagen, S Posch, J Grau Genome biology 20, 1-17, 2019	120	2019
Highly efficient multiplex editing: one‐shot generation of 8× Nicotiana benthamiana and 12× Arabidopsis mutants J Stuttmann, K Barthel, P Martin, J Ordon, JL Erickson, R Herr, F Ferik, ... The Plant Journal 106 (1), 8-22, 2021	102	2021
The Terpene Synthase Gene Family of Carrot (Daucus carota L.): Identification of QTLs and Candidate Genes Associated with Terpenoid Volatile Compounds J Keilwagen, H Lehnert, T Berner, H Budahn, T Nothnagel, D Ulrich, ... Frontiers in plant science 8, 1930, 2017	84	2017
Varying levels of complexity in transcription factor binding motifs J Keilwagen, J Grau Nucleic acids research 43 (18), e119-e119, 2015	80	2015
DiffLogo: a comparative visualization of sequence motifs M Nettling, H Treutler, J Grau, J Keilwagen, S Posch, I Grosse BMC bioinformatics 16, 1-9, 2015	75	2015
De-novo discovery of differentially abundant transcription factor binding sites including their positional preference J Keilwagen, J Grau, IA Paponov, S Posch, M Strickert, I Grosse PLoS Computational Biology 7 (2), e1001070, 2011	67	2011
Baculovirus Kimura two-parameter species demarcation criterion is confirmed by the distances of 38 core gene nucleotide sequences JT Wennmann, J Keilwagen, JA Jehle Journal of General Virology 99 (9), 1307-1320, 2018	61	2018

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