| Drug repositioning by kernel-based integration of molecular structure, molecular activity, and phenotype data Y Wang, S Chen, N Deng, Y Wang PloS one 8 (11), e78518, 2013 | 166 | 2013 |
| Prediction of palmitoylation sites using the composition of k-spaced amino acid pairs XB Wang, LY Wu, YC Wang, NY Deng Protein Engineering, Design & Selection 22 (11), 707-712, 2009 | 95 | 2009 |
| Prediction of enzyme subfamily class via pseudo amino acid composition by incorporating the conjoint triad feature YC Wang, XB Wang, ZX Yang, NY Deng Protein and Peptide Letters 17 (11), 1441-1449, 2010 | 90 | 2010 |
| Predicting DNA-and RNA-binding proteins from sequences with kernel methods X Shao, Y Tian, L Wu, Y Wang, L Jing, N Deng Journal of Theoretical Biology 258 (2), 289-293, 2009 | 86 | 2009 |
| Deep learning of the splicing (epi) genetic code reveals a novel candidate mechanism linking histone modifications to ESC fate decision Y Xu, Y Wang, J Luo, W Zhao, X Zhou Nucleic acids research 45 (21), 12100-12112, 2017 | 74 | 2017 |
| Kernel-based data fusion improves the drug–protein interaction prediction YC Wang, CH Zhang, NY Deng, Y Wang Computational biology and chemistry 35 (6), 353-362, 2011 | 74 | 2011 |
| Computationally probing drug-protein interactions via support vector machine YC Wang, ZX Yang, Y Wang, NY Deng Letters in Drug Design & Discovery 7 (5), 370-378, 2010 | 61 | 2010 |
| Network predicting drug’s anatomical therapeutic chemical code YC Wang, SL Chen, NY Deng, Y Wang Bioinformatics 29 (10), 1317-1324, 2013 | 56 | 2013 |
| Support vector machine prediction of enzyme function with conjoint triad feature and hierarchical context YC Wang, Y Wang, ZX Yang, NY Deng BMC systems biology 5, 1-11, 2011 | 55 | 2011 |
| Prediction of posttranslational modification sites from amino acid sequences with kernel methods Y Xu, X Wang, Y Wang, Y Tian, X Shao, LY Wu, N Deng Journal of theoretical biology 344, 78-87, 2014 | 53 | 2014 |
| Inferences of drug responses in cancer cells from cancer genomic features and compound chemical and therapeutic properties Y Wang, J Fang, S Chen Scientific reports 6 (1), 32679, 2016 | 37 | 2016 |
| Computational study of drugs by integrating omics data with kernel methods YC Wang, N Deng, S Chen, Y Wang Molecular Informatics 32 (11‐12), 930-941, 2013 | 15 | 2013 |
| Computational probing protein–protein interactions targeting small molecules YC Wang, SL Chen, NY Deng, Y Wang Bioinformatics 32 (2), 226-234, 2016 | 14 | 2016 |
| Sequence-based protein-protein interaction prediction via support vector machine Y Wang, J Wang, Z Yang, N Deng Journal of Systems Science and Complexity 23 (5), 1012-1023, 2010 | 13 | 2010 |
| Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation X Ren, YC Wang, Y Wang, XS Zhang, NY Deng BMC bioinformatics 12, 1-9, 2011 | 11 | 2011 |
| Integration of genomic data analysis for demonstrating potential targets in the subgroup populations of squamous cell lung cancer patients Y Wang, W Zhao, X Zhou Oncotarget 5, 2016 | 6 | 2016 |
| Distinguishing enzymes from non-enzymes via support vector machine Y Wang, Y Tian, N Deng The Second International Symposium on Optimization and Systems Biology, 166-173, 2008 | 6 | 2008 |
| Matrix factorization reveals aging-specific co-expression gene modules in the fat and muscle tissues in nonhuman primates Y Wang, W Zhao, X Zhou Scientific Reports 6 (1), 34335, 2016 | 2 | 2016 |
| SVM-based Method for Predicting Enzyme Function in a Hierarchical Context YC Wang, ZX Yang, NY Deng The Fourth International Conference on Computational Systems Biology …, 2010 | 2 | 2010 |
| Prediction of protein-protein interaction based only on coding sequences YC Wang, JG Wang, ZX Yang, N Deng Proceedings of the 8th International Symposium on Optimization and Systems …, 2009 | 2 | 2009 |
