Simon Coakley

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Mike HolcombeEmeritus Professor, University of Sheffield, UKVerified email at sheffield.ac.uk
Shawn ChinComputational Scientist, Science and Technology Facilities CouncilVerified email at stfc.ac.uk
Rod SmallwoodEmeritus Professor of Computational Systems BiologyVerified email at sheffield.ac.uk
Paul RichmondProfessor of Research Software Engineering, Department of Computer Science, University of SheffieldVerified email at sheffield.ac.uk
Mariam KiranOak Ridge National LaboratoryVerified email at ornl.gov
Daniela M. RomanoUCL & IAI De MontfortVerified email at ucl.ac.uk
Phil McMinnProfessor of Software Engineering, University of SheffieldVerified email at sheffield.ac.uk
Sheila MacNeilUniversity of SheffieldVerified email at sheffield.ac.uk
Marian GheorgheUniversity of BradfordVerified email at bradford.ac.uk
Dawn C WalkerLecturer in Computer Science, University of SheffieldVerified email at sheffield.ac.uk
Marco RabertoProfessor of Business and Management Engineering, University of Genoa, ItalyVerified email at unige.it
Andrea TeglioUniversity Ca' Foscari, VeniceVerified email at unive.it
Michael NeugartTechnische Universität DarmstadtVerified email at vwl.tu-darmstadt.de
Herbert DawidBielefeld UniversityVerified email at wiwi.uni-bielefeld.de
Francis RatnieksUniversity of SussexVerified email at Sussex.ac.uk
Mesude BicakSenior Researcher in Bioinformatics, University of OxfordVerified email at oerc.ox.ac.uk
Mark PogsonUniversity of LiverpoolVerified email at liverpool.ac.uk
Silvano CincottiProfessor of Economics and Management - University of GenoaVerified email at unige.it
Philipp HartingGREDEG, Université Cote d'AzurVerified email at wiwi.uni-bielefeld.de
Neil WalkinshawSchool of Computer Science, The University of SheffieldVerified email at sheffield.ac.uk

Simon Coakley

Schlumberger

Verified email at slb.com

Agent Based Modelling High Performance Computing


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High performance cellular level agent-based simulation with FLAME for the GPU P Richmond, D Walker, S Coakley, D Romano Briefings in bioinformatics 11 (3), 334-347, 2010	256	2010
Exploitation of high performance computing in the FLAME agent-based simulation framework S Coakley, M Gheorghe, M Holcombe, S Chin, D Worth, C Greenough 2012 IEEE 14th International Conference on High Performance Computing and …, 2012	138	2012
A high performance agent based modelling framework on graphics card hardware with CUDA P Richmond, S Coakley, DM Romano Proceedings of The 8th International Conference on Autonomous Agents and …, 2009	112	2009
Modelling complex biological systems using an agent-based approach M Holcombe, S Adra, M Bicak, S Chin, S Coakley, AI Graham, J Green, ... Integrative Biology 4 (1), 53-64, 2012	90	2012
An integrated systems biology approach to understanding the rules of keratinocyte colony formation T Sun, P McMinn, S Coakley, M Holcombe, R Smallwood, S MacNeil Journal of the Royal Society Interface 4 (17), 1077-1092, 2007	78	2007
A general framework for agent-based modelling of complex systems M Holcombe, S Coakley, R Smallwood Proceedings of the 2006 European conference on complex systems 1, 2006	65	2006
Large-scale modeling of economic systems M Holcombe, S Coakley, M Kiran, S Chin, C Greenough, D Worth, ... Complex Systems Publications, 2013	49	2013
Using x-machines as a formal basis for describing agents in agent-based modelling S Coakley, R Smallwood, M Holcombe Simulation Series 38 (2), 33, 2006	48	2006
From molecules to insect communities-How formal agent based computational modelling is uncovering new biological facts S Coakley, R Smallwood, M Holcombe Scientiae Mathematicae Japonicae 64 (2), 185-198, 2006	45	2006
Cellular level agent based modelling on the graphics processing unit P Richmond, S Coakley, D Romano 2009 international workshop on high performance computational systems …, 2009	37	2009
Validation and discovery from computational biology models M Kiran, S Coakley, N Walkinshaw, P McMinn, M Holcombe Biosystems 93 (1-2), 141-150, 2008	27	2008
Formal software architecture for agent-based modelling in biology ST Coakley University of Sheffield, 2007	27	2007
Agent-Based Modeling of Oxygen-Responsive Transcription Factors in Escherichia coli H Bai, MD Rolfe, W Jia, S Coakley, RK Poole, J Green, M Holcombe Plos computational biology 10 (4), e1003595, 2014	19	2014
Large-scale simulations with FLAME S Coakley, P Richmond, M Gheorghe, S Chin, D Worth, M Holcombe, ... Intelligent Agents in Data-intensive Computing, 123-142, 2016	17	2016
Flame-ii: a redesign of the flexible large-scale agent-based modelling environment LS Chin, D Worth, C Greenough, S Coakley, M Holcombe, M Gheorghe Rutherford Appleton Lab Tech Rep, 2012	14	2012
Flame: An approach to the parallelisation of agent-based applications AL Chin, AD Worth, AC Greenough, S Coakley, M Holcombe, M Kiran Work 501, 63259, 2012	13	2012
An Agent-Based software platform for modelling systems biology SF Adra, S Coakley, M Kiran, P McMinn University of Sheffield Epitheliome Project: Technical Report: University of …, 2008	9	2008
Individual cell-based simulation of 3D multicellular spheroid self-assembly J Zhu, S Coakley, M Holcombe, S MacNeil, RH Smallwood	5	2006
Modelling and Analysis of *E. coli* Respiratory Chain A Ţurcanu, L Mierlă, F Ipate, A Stefanescu, H Bai, M Holcombe, S Coakley Applications of Membrane Computing in Systems and Synthetic Biology, 247-266, 2014	4	2014
The exploitation of parallel high performance systems in the FLAME agent-based simulation framework C Greenough, D Worth, S Chin, M Holcombe, S Coakley RAL Technical Reports RAL-TR-2008-022, 2008	4	2008

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