| Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome research 30 (7), 1060-1072, 2020 | 159 | 2020 |
| A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment V Sharma, AE Firth, I Antonov, O Fayet, JF Atkins, M Borodovsky, ... Molecular biology and evolution 28 (11), 3195-3211, 2011 | 62 | 2011 |
| Gene discovery in EST sequences from the wheat leaf rust fungus Puccinia triticina sexual spores, asexual spores and haustoria, compared to other rust and corn … J Xu, R Linning, J Fellers, M Dickinson, W Zhu, I Antonov, DL Joly, ... BMC genomics 12, 1-15, 2011 | 58 | 2011 |
| Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics tools IV Antonov, E Mazurov, M Borodovsky, YA Medvedeva Briefings in bioinformatics 20 (2), 551-564, 2019 | 56 | 2019 |
| Genetack: frameshift identification in protein-coding sequences by the Viterbi algorithm I Antonov, M Borodovsky Journal of bioinformatics and computational biology 8 (03), 535-551, 2010 | 54 | 2010 |
| Identification of the nature of reading frame transitions observed in prokaryotic genomes I Antonov, A Coakley, JF Atkins, PV Baranov, M Borodovsky Nucleic acids research 41 (13), 6514-6530, 2013 | 49 | 2013 |
| Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus IK Jordan, AB Conley, IV Antonov, RA Arthur, ED Cook, GP Cooper, ... Journal of bacteriology 193 (20), 5879-5880, 2011 | 29 | 2011 |
| GeneTack database: genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequences I Antonov, P Baranov, M Borodovsky Nucleic acids research 41 (D1), D152-D156, 2012 | 20 | 2012 |
| Practical guidance in genome-wide RNA: DNA triple helix prediction E Matveishina, I Antonov, YA Medvedeva International journal of molecular sciences 21 (3), 830, 2020 | 19 | 2020 |
| MetaGeneTack: ab initio detection of frameshifts in metagenomic sequences S Tang, I Antonov, M Borodovsky Bioinformatics 29 (1), 114-116, 2013 | 19 | 2013 |
| ASSA: Fast identification of statistically significant interactions between long RNAs I Antonov, A Marakhonov, M Zamkova, Y Medvedeva Journal of bioinformatics and computational biology 16 (01), 1840001, 2018 | 15 | 2018 |
| Purine-rich low complexity regions are potential RNA binding hubs in the human genome I Antonov, YA Medvedeva F1000Research 7, 76, 2019 | 11 | 2019 |
| Direct interactions with nascent transcripts is potentially a common targeting mechanism of long non-coding RNAs I Antonov, Y Medvedeva Genes 11 (12), 1483, 2020 | 10 | 2020 |
| Two Cobalt Chelatase Subunits Can Be Generated from a Single chlD Gene via Programed Frameshifting IV Antonov Molecular Biology and Evolution 37 (8), 2268-2278, 2020 | 10 | 2020 |
| Analysis of discordant Affymetrix probesets casts serious doubt on idea of microarray data reutilization A Marakhonov, N Sadovskaya, I Antonov, A Baranova, M Skoblov Bmc Genomics 15, 1-15, 2014 | 4 | 2014 |
| Streptomyces rare codon UUA: from features associated with 2 adpA related locations to candidate phage regulatory translational bypassing IV Antonov, S O’Loughlin, AN Gorohovski, PBF O’Connor, PV Baranov, ... RNA biology 20 (1), 926-942, 2023 | 3 | 2023 |
| Translational Frameshifting in the chlD Gene Gives a Clue to the Coevolution of the Chlorophyll and Cobalamin Biosyntheses S Kuznetsov, A Milenkin, I Antonov Microorganisms 10 (6), 1200, 2022 | 3 | 2022 |
| Functional annotation of lncRNAs involved in epigenetic regulation E Mazurov, I Antonov, A Zubritskiy, A Budkina, E Matveishina, VJ Makeev, ... Bioinformatics of Genome Regulation and Structure/Systems Biology (BGRS/SB …, 2022 | | 2022 |
| Search for frame shift signals in bacterial genomes A Petrov, A Milenkin, I Antonov | | 2021 |
| Triplex target sites of MEG3 RNA-chromatin interactions YA Medvedeva, I Antonov F1000Research 7, 2018 | | 2018 |
Mark BorodovskyRegents' Professor, Georgia TechVerified email at gatech.edu