| Updating benchtop sequencing performance comparison S Jünemann, FJ Sedlazeck, K Prior, A Albersmeier, U John, J Kalinowski, ... Nature biotechnology 31 (4), 294-296, 2013 | 515 | 2013 |
| Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing S Jaenicke, C Ander, T Bekel, R Bisdorf, M Dröge, KH Gartemann, ... PloS one 6 (1), e14519, 2011 | 299 | 2011 |
| Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing M Zakrzewski, A Goesmann, S Jaenicke, S Jünemann, F Eikmeyer, ... Journal of biotechnology 158 (4), 248-258, 2012 | 255 | 2012 |
| Bacterial community shift in treated periodontitis patients revealed by ion torrent 16S rRNA gene amplicon sequencing S Jünemann, K Prior, R Szczepanowski, I Harks, B Ehmke, A Goesmann, ... Public Library of Science 7 (8), e41606, 2012 | 184 | 2012 |
| Metagenome analyses reveal the influence of the inoculant Lactobacillus buchneri CD034 on the microbial community involved in grass ensiling FG Eikmeyer, P Köfinger, A Poschenel, S Jünemann, M Zakrzewski, ... Journal of biotechnology 167 (3), 334-343, 2013 | 133 | 2013 |
| Importance of rare taxa for bacterial diversity in the rhizosphere of Bt- and conventional maize varieties AB Dohrmann, M Küting, S Jünemann, S Jaenicke, A Schlüter, CC Tebbe The ISME journal 7 (1), 37-49, 2013 | 129 | 2013 |
| Bioinformatics for NGS-based metagenomics and the application to biogas research S Jünemann, N Kleinbölting, S Jaenicke, C Henke, J Hassa, J Nelkner, ... Journal of biotechnology 261, 10-23, 2017 | 119 | 2017 |
| WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads W Gerlach, S Jünemann, F Tille, A Goesmann, J Stoye BMC bioinformatics 10, 1-10, 2009 | 111 | 2009 |
| EMMA 2–a MAGE-compliant system for the collaborative analysis and integration of microarray data M Dondrup, SP Albaum, T Griebel, K Henckel, S Jünemann, T Kahlke, ... BMC bioinformatics 10, 1-14, 2009 | 80 | 2009 |
| Ion torrent personal genome machine sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information U Vogel, R Szczepanowski, H Claus, S Jünemann, K Prior, D Harmsen Journal of clinical microbiology 50 (6), 1889-1894, 2012 | 69 | 2012 |
| Do we treat our patients or rather periodontal microbes with adjunctive antibiotics in periodontal therapy? A 16S rDNA microbial community analysis D Hagenfeld, R Koch, S Jünemann, K Prior, I Harks, P Eickholz, ... PloS one 13 (4), e0195534, 2018 | 47 | 2018 |
| Changes in Root Bacterial Communities Associated to Two Different Development Stages of Canola (Brassica napus L. var oleifera) Evaluated through Next … SB de Campos, JW Youn, R Farina, S Jaenicke, S Jünemann, ... Microbial ecology 65, 593-601, 2013 | 47 | 2013 |
| GABenchToB: a genome assembly benchmark tuned on bacteria and benchtop sequencers S Jünemann, K Prior, A Albersmeier, S Albaum, J Kalinowski, ... PLoS One 9 (9), e107014, 2014 | 43 | 2014 |
| Individual-and species-specific skin microbiomes in three different estrildid finch species revealed by 16S amplicon sequencing K Engel, J Sauer, S Jünemann, A Winkler, D Wibberg, J Kalinowski, ... Microbial Ecology 76, 518-529, 2018 | 41 | 2018 |
| Family matters: skin microbiome reflects the social group and spatial proximity in wild zebra finches K Engel, H Pankoke, S Jünemann, HB Brandl, J Sauer, SC Griffith, ... BMC ecology 20, 1-11, 2020 | 24 | 2020 |
| Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum R Rettenmaier, M Schneider, B Munk, M Lebuhn, S Jünemann, A Sczyrba, ... Microorganisms 8 (6), 915, 2020 | 20 | 2020 |
| The gut microbial composition is species-specific and individual-specific in two species of estrildid finches, the Bengalese finch and the zebra finch Ö Maraci, A Antonatou-Papaioannou, S Jünemann, O Castillo-Gutiérrez, ... Frontiers in Microbiology 12, 619141, 2021 | 19 | 2021 |
| Changes to the gut microbiota of a wild juvenile passerine in a multidimensional urban mosaic Ö Maraci, M Corsini, A Antonatou-Papaioannou, S Jünemann, J Sudyka, ... Scientific Reports 12 (1), 6872, 2022 | 16 | 2022 |
| Multiple occurrences of a 168-nucleotide deletion in SARS-CoV-2 ORF8, unnoticed by standard amplicon sequencing and variant calling pipelines D Brandt, M Simunovic, T Busche, M Haak, P Belmann, S Jünemann, ... Viruses 13 (9), 1870, 2021 | 10 | 2021 |
| Analysis of the Metagenome from a Biogas‐Producing Microbial Community by Means of Bioinformatics Methods S Jaenicke, M Zakrzewski, S Jünemann, A Pühler, A Goesmann, ... Handbook of molecular microbial ecology II: metagenomics in different …, 2011 | 10 | 2011 |
