| TCC: an R package for comparing tag count data with robust normalization strategies J Sun, T Nishiyama, K Shimizu, K Kadota BMC bioinformatics 14, 1-14, 2013 | 578 | 2013 |
| TCC-GUI: a Shiny-based application for differential expression analysis of RNA-Seq count data W Su, J Sun, K Shimizu, K Kadota BMC research notes 12, 1-6, 2019 | 119 | 2019 |
| Evaluation of methods for differential expression analysis on multi-group RNA-seq count data M Tang, J Sun, K Shimizu, K Kadota BMC bioinformatics 16, 1-14, 2015 | 82 | 2015 |
| Silhouette scores for arbitrary defined groups in gene expression data and insights into differential expression results S Zhao, J Sun, K Shimizu, K Kadota Biological procedures online 20, 1-12, 2018 | 48 | 2018 |
| Fine‐scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species R Akiyama, J Sun, M Hatakeyama, HEL Lischer, RV Briskine, A Hay, ... New Phytologist 229 (6), 3587-3601, 2021 | 21 | 2021 |
| Few‐shot learning for plant disease recognition: A review J Sun, W Cao, X Fu, S Ochi, T Yamanaka Agronomy Journal 116 (3), 1204-1216, 2024 | 19 | 2024 |
| A Recently Formed Triploid Cardamine insueta Inherits Leaf Vivipary and Submergence Tolerance Traits of Parents J Sun, R Shimizu-Inatsugi, H Hofhuis, K Shimizu, A Hay, KK Shimizu, ... Frontiers in genetics 11, 567262, 2020 | 15 | 2020 |
| Characteristic features of statistical models and machine learning methods derived from pest and disease monitoring datasets S Kishi, J Sun, A Kawaguchi, S Ochi, M Yoshida, T Yamanaka Royal Society Open Science 10 (6), 230079, 2023 | 11 | 2023 |
| High-Throughput Sequencing of the Expressed Torafugu (Takifugu rubripes) Antibody Sequences Distinguishes IgM and IgT Repertoires and Reveals Evidence of … X Fu, J Sun, E Tan, K Shimizu, MS Reza, S Watabe, S Asakawa Frontiers in Immunology 9, 251, 2018 | 10 | 2018 |
| Improving the accuracy of species identification by combining deep learning with field occurrence records J Sun, R Futahashi, T Yamanaka Frontiers in Ecology and Evolution 9, 762173, 2021 | 8 | 2021 |
| A low-coverage 3′ RNA-seq to detect homeolog expression in polyploid wheat J Sun, M Okada, T Tameshige, R Shimizu-Inatsugi, R Akiyama, ... NAR Genomics and Bioinformatics 5 (3), lqad067, 2023 | 4 | 2023 |
| Fine-scale ecological and transcriptomic data reveal niche differentiation of an allopolyploid from diploid parents in Cardamine R Akiyama, J Sun, M Hatakeyama, HEL Lischer, RV Briskine, A Hay, ... bioRxiv, 600783, 2019 | 4 | 2019 |
| JustDeepIt: Software tool with graphical and character user interfaces for deep learning-based object detection and segmentation in image analysis J Sun, W Cao, T Yamanaka Frontiers in Plant Science 13, 964058, 2022 | 3 | 2022 |
| Seasonal pigment fluctuation in diploid and polyploid Arabidopsis revealed by machine learning-based phenotyping method PlantServation R Akiyama, T Goto, T Tameshige, J Sugisaka, K Kuroki, J Sun, J Akita, ... Nature Communications 14 (1), 5792, 2023 | 2 | 2023 |
| Predicting symptom severity in PSTVd‐infected tomato plants using the PSTVd genome sequence J Sun, Y Matsushita Molecular Plant Pathology 25 (7), e13469, 2024 | 1 | 2024 |
| CircSeqAlignTk: An R package for end-to-end analysis of RNA-seq data for circular genomes J Sun, X Fu, W Cao F1000Research 11, 1221, 2024 | 1 | 2024 |
| Mitigating excessive heat in Arabica coffee using nanosilicon and seaweed extract to enhance element homeostasis and photosynthetic recovery E Chandon, P Nualkhao, M Vibulkeaw, R Tisarum, T Samphumphuang, ... BMC Plant Biology 24 (1), 1-11, 2024 | | 2024 |
| Addressing domain shift in deep learning: Challenges and insights from plant disease diagnosis and flower recognition J Sun bioRxiv, 2024.10. 07.617111, 2024 | | 2024 |
| PlantServation: time-series phenotyping using machine learning revealed seasonal pigment fluctuation in diploid and polyploid Arabidopsis R Akiyama, T Goto, T Tameshige, J Sugisaka, K Kuroki, J Sun, J Akita, ... bioRxiv, 2022.11. 21.517294, 2022 | | 2022 |
| Fine-scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species (vol 229, pg 3587, 2021) R Akiyama, RV Briskine, X Gan, M Hatakeyama, H Kudoh, HEL Lischer, ... NEW PHYTOLOGIST 231 (1), 500-500, 2021 | | 2021 |
