| Haplotype-resolved diverse human genomes and integrated analysis of structural variation P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ... Science 372 (6537), eabf7117, 2021 | 522 | 2021 |
| The opium poppy genome and morphinan production L Guo, T Winzer, X Yang, Y Li, Z Ning, Z He, R Teodor, Y Lu, TA Bowser, ... Science 362 (6412), 343-347, 2018 | 289 | 2018 |
| Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks X Guo, L Gao, Q Liao, H Xiao, X Ma, X Yang, H Luo, G Zhao, D Bu, F Jiao, ... Nucleic acids research 41 (2), e35-e35, 2013 | 201 | 2013 |
| A network based method for analysis of lncRNA-disease associations and prediction of lncRNAs implicated in diseases X Yang, L Gao, X Guo, X Shi, H Wu, F Song, B Wang PloS one 9 (1), e87797, 2014 | 170 | 2014 |
| Comparative pan-cancer DNA methylation analysis reveals cancer common and specific patterns X Yang, L Gao, S Zhang Briefings in bioinformatics 18 (5), 761-773, 2017 | 157 | 2017 |
| High-Quality Arabidopsis Thaliana Genome Assembly with Nanopore and HiFi Long Reads B Wang, X Yang, Y Jia, Y Xu, P Jia, N Dang, S Wang, T Xu, X Zhao, S Gao, ... Genomics, Proteomics and Bioinformatics 20 (1), 4-13, 2022 | 124 | 2022 |
| One reference genome is not enough X Yang, WP Lee, K Ye, C Lee Genome biology 20, 1-3, 2019 | 77 | 2019 |
| A pangenome reference of 36 Chinese populations Y Gao, X Yang, H Chen, X Tan, Z Yang, L Deng, B Wang, S Kong, S Li, ... Nature 619 (7968), 112-121, 2023 | 71 | 2023 |
| MSIsensor-pro: fast, accurate, and matched-normal-sample-free detection of microsatellite instability P Jia, X Yang, L Guo, B Liu, J Lin, H Liang, J Sun, C Zhang, K Ye Genomics, Proteomics and Bioinformatics 18 (1), 65-71, 2020 | 70 | 2020 |
| Three chromosome-scale Papaver genomes reveal punctuated patchwork evolution of the morphinan and noscapine biosynthesis pathway X Yang, S Gao, L Guo, B Wang, Y Jia, J Zhou, Y Che, P Jia, J Lin, T Xu, ... Nature communications 12 (1), 6030, 2021 | 62 | 2021 |
| Detecting overlapping protein complexes by rough-fuzzy clustering in protein-protein interaction networks H Wu, L Gao, J Dong, X Yang PloS one 9 (3), e91856, 2014 | 61 | 2014 |
| Systematic DNA methylation analysis of multiple cell lines reveals common and specific patterns within and across tissues of origin X Yang, X Shao, L Gao, S Zhang Human molecular genetics 24 (15), 4374-4384, 2015 | 46 | 2015 |
| SVision: a deep learning approach to resolve complex structural variants J Lin, S Wang, PA Audano, D Meng, JI Flores, W Kosters, X Yang, P Jia, ... Nature Methods 19 (10), 1230-1233, 2022 | 44 | 2022 |
| A computational method based on the integration of heterogeneous networks for predicting disease-gene associations X Guo, L Gao, C Wei, X Yang, Y Zhao, A Dong PloS one 6 (9), e24171, 2011 | 40 | 2011 |
| Cellular heterogeneity and transcriptomic profiles during intrahepatic cholangiocarcinoma initiation and progression T Wang, C Xu, Z Zhang, H Wu, X Li, Y Zhang, N Deng, N Dang, G Tang, ... Hepatology 76 (5), 1302-1317, 2022 | 33 | 2022 |
| Discovering DNA methylation patterns for long non-coding RNAs associated with cancer subtypes X Ma, L Yu, P Wang, X Yang Computational biology and chemistry 69, 164-170, 2017 | 32 | 2017 |
| Integrating bulk and single‐cell RNA sequencing reveals cellular heterogeneity and immune infiltration in hepatocellular carcinoma T Wang, N Dang, G Tang, Z Li, X Li, B Shi, Z Xu, L Li, X Yang, C Xu, K Ye Molecular Oncology 16 (11), 2195-2213, 2022 | 30 | 2022 |
| Split-Read Indel and Structural Variant Calling Using PINDEL K Ye, L Guo, X Yang, EW Lamijer, K Raine, Z Ning Copy Number Variants: Methods and Protocols, 95-105, 2018 | 27 | 2018 |
| Identifying Overlapping Mutated Driver Pathways by Constructing Gene Networks in Cancer H Wu, L Gao, F Li, F Song, X Yang, N Kasabov BMC Bioinformatics 16 (Suppl 5), 2015 | 26 | 2015 |
| Comparative DNA methylation analysis to decipher common and cell type-specific patterns among multiple cell types X Yang, X Shao, L Gao, S Zhang Briefings in functional genomics 15 (6), 399-407, 2016 | 19 | 2016 |
Kai YeXi'an Jiaotong UniversityVerified email at xjtu.edu.cn