| Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and … Y Yang, E Faraggi, H Zhao, Y Zhou Bioinformatics 27 (15), 2076-2082, 2011 | 379 | 2011 |
| SPINE X: improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles E Faraggi, T Zhang, Y Yang, L Kurgan, Y Zhou Journal of computational chemistry 33 (3), 259-267, 2012 | 299 | 2012 |
| SPINE-D: accurate prediction of short and long disordered regions by a single neural-network based method T Zhang, E Faraggi, B Xue, AK Dunker, VN Uversky, Y Zhou Journal of Biomolecular Structure and Dynamics 29 (4), 799-813, 2012 | 190 | 2012 |
| Predicting continuous local structure and the effect of its substitution for secondary structure in fragment-free protein structure prediction E Faraggi, Y Yang, S Zhang, Y Zhou Structure 17 (11), 1515-1527, 2009 | 153 | 2009 |
| Improving the prediction accuracy of residue solvent accessibility and real‐value backbone torsion angles of proteins by guided‐learning through a two‐layer neural network E Faraggi, B Xue, Y Zhou Proteins: Structure, Function, and Bioinformatics 74 (4), 847-856, 2009 | 145 | 2009 |
| BEST: improved prediction of B-cell epitopes from antigen sequences J Gao, E Faraggi, Y Zhou, J Ruan, L Kurgan PloS one 7 (6), e40104, 2012 | 109 | 2012 |
| Direct prediction of profiles of sequences compatible with a protein structure by neural networks with fragment‐based local and energy‐based nonlocal profiles Z Li, Y Yang, E Faraggi, J Zhan, Y Zhou Proteins: Structure, Function, and Bioinformatics 82 (10), 2565-2573, 2014 | 87 | 2014 |
| Real‐value prediction of backbone torsion angles B Xue, O Dor, E Faraggi, Y Zhou Proteins: Structure, Function, and Bioinformatics 72 (1), 427-433, 2008 | 87 | 2008 |
| Intrinsically semi-disordered state and its role in induced folding and protein aggregation T Zhang, E Faraggi, Z Li, Y Zhou Cell biochemistry and biophysics 67, 1193-1205, 2013 | 71 | 2013 |
| The GOR method of protein secondary structure prediction and its application as a protein aggregation prediction tool M Kouza, E Faraggi, A Kolinski, A Kloczkowski Prediction of protein secondary structure, 7-24, 2017 | 69 | 2017 |
| Accurate single‐sequence prediction of solvent accessible surface area using local and global features E Faraggi, Y Zhou, A Kloczkowski Proteins: Structure, Function, and Bioinformatics 82 (11), 3170-3176, 2014 | 63 | 2014 |
| DescribePROT: database of amino acid-level protein structure and function predictions B Zhao, A Katuwawala, CJ Oldfield, AK Dunker, E Faraggi, J Gsponer, ... Nucleic Acids Research 49 (D1), D298-D308, 2021 | 59 | 2021 |
| Predicting residue–residue contact maps by a two‐layer, integrated neural‐network method B Xue, E Faraggi, Y Zhou Proteins: Structure, Function, and Bioinformatics 76 (1), 176-183, 2009 | 57 | 2009 |
| Trends in template/fragment-free protein structure prediction Y Zhou, Y Duan, Y Yang, E Faraggi, H Lei Theoretical chemistry accounts 128, 3-16, 2011 | 54 | 2011 |
| Magnetic energy loss in permalloy thin films and microstructures C Nistor, E Faraggi, JL Erskine Physical Review B—Condensed Matter and Materials Physics 72 (1), 014404, 2005 | 42 | 2005 |
| Fluctuations of backbone torsion angles obtained from NMR‐determined structures and their prediction T Zhang, E Faraggi, Y Zhou Proteins: Structure, Function, and Bioinformatics 78 (16), 3353-3362, 2010 | 39 | 2010 |
| Biophysical effects of pulsed lasers in the retina<? xpp qa?> and other tissues containing strongly absorbing<? xpp qa?> particles: shockwave and explosive bubble generation E Faraggi, BS Gerstman, J Sun Journal of biomedical optics 10 (6), 064029-064029-10, 2005 | 32 | 2005 |
| A global machine learning based scoring function for protein structure prediction E Faraggi, A Kloczkowski Biophysical Journal 106 (2), 656a-657a, 2014 | 29 | 2014 |
| Stress confinement, shock wave formation, and laser-induced damage E Faraggi, S Wang, B Gerstman Optical Interactions with Tissue and Cells XVI 5695, 209-215, 2005 | 27 | 2005 |
| An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12 C Keasar, LJ McGuffin, B Wallner, G Chopra, B Adhikari, D Bhattacharya, ... Scientific reports 8 (1), 9939, 2018 | 24 | 2018 |