Foivos Gypas

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Mihaela ZavolanProfessor of Computational Biology, Biozentrum, University of BaselVerified email at unibas.ch
Alexander KanitzBiozentrum, University of BaselVerified email at unibas.ch
Andreas R. GruberPaperpile LLCVerified email at paperpile.com
Helge GrosshansResearch Groupleader, FMIVerified email at fmi.ch
Rafal GumiennyUniversity of Basel, BiozentrumVerified email at unibas.ch
Frederic AllainProfessor of BioNMRVerified email at mol.biol.ethz.ch
Oliver MühlemannProfessor of BiochemistryVerified email at unibe.ch
Evangelos D KarousisJunior Group LeaderVerified email at unibe.ch
Riba AndreaLeroy MerlinVerified email at leroymerlin.it
Andreas J. GruberUniversity of KonstanzVerified email at uni-konstanz.de
Maria KatsantoniUniversity of BaselVerified email at unibas.ch
Tsaousis GeorgiosFaculty of Biology, National and Kapodistrian University of Athens, Genekor Medical SAVerified email at biol.uoa.gr
STAVROS HAMODRAKASVerified email at biol.uoa.gr
Andreas MentisIASO, General Maternity and Gynecology ClinicVerified email at iaso.gr
Erik van NimwegenProfessor of computational systems biology, Biozentrum, University of BaselVerified email at unibas.ch
Michalis ZervakisTechnical University of CreteVerified email at display.tuc.gr
Stelios SfakianakisComputational BioMedicine Laboratory, Institute of Computer Science, FORTHVerified email at ics.forth.gr

Foivos Gypas

Novartis Institutes for Biomedical Research (NIBR)

Verified email at novartis.com - Homepage

Bioinformatics Data Science Software Development Computational RNA Biology


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Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data A Kanitz, F Gypas, AJ Gruber, AR Gruber, G Martin, M Zavolan Genome biology 16, 1-26, 2015	169	2015
High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq R Gumienny, DJ Jedlinski, A Schmidt, F Gypas, G Martin, A Vina-Vilaseca, ... Nucleic acids research 45 (5), 2341-2353, 2017	63	2017
Aberrant interaction of FUS with the U1 snRNA provides a molecular mechanism of FUS induced amyotrophic lateral sclerosis D Jutzi, S Campagne, R Schmidt, S Reber, J Mechtersheimer, F Gypas, ... Nature Communications 11 (1), 6341, 2020	61	2020
Nanopore sequencing reveals endogenous NMD-targeted isoforms in human cells ED Karousis, F Gypas, M Zavolan, O Mühlemann Genome biology 22 (1), 223, 2021	51	2021
Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms AJ Gruber, F Gypas, A Riba, R Schmidt, M Zavolan Nature methods 15 (10), 832-836, 2018	31	2018
Protease-mediated processing of Argonaute proteins controls small RNA association RK Gudipati, K Braun, F Gypas, D Hess, J Schreier, SH Carl, RF Ketting, ... Molecular cell 81 (11), 2388-2402. e8, 2021	17	2021
A specific type of Argonaute phosphorylation regulates binding to microRNAs during C. elegans development MQ Huberdeau, VN Shah, S Nahar, J Neumeier, F Houle, A Bruckmann, ... Cell reports 41 (11), 2022	13	2022
Gene expression signatures of a preclinical mouse model during colorectal cancer progression under low-dose metronomic chemotherapy H Ho-Xuan, G Lehmann, P Glazar, F Gypas, N Eichner, K Heizler, ... Cancers 13 (1), 49, 2020	9	2020
mpMoRFsDB: a database of molecular recognition features in membrane proteins F Gypas, GN Tsaousis, SJ Hamodrakas Bioinformatics 29 (19), 2517-2518, 2013	8	2013
Human enteric microbiome: Its role in health and disease ΑFA Mentis, F Gypas, AF Mentis Archives of Hellenic Medicine 30 (3), 272-288, 2013	8	2013
ZARP: An automated workflow for processing of RNA-seq data M Katsantoni, F Gypas, CJ Herrmann, D Burri, M Bak, P Iborra, K Agarwal, ... bioRxiv, 2021	6	2021
Ewing sarcoma breakpoint region 1 prevents transcription-associated genome instability N Mittal, C Kunz, F Gypas, S Kishore, G Martin, F Wenzel, ... bioRxiv, 034215, 2015	4	2015
A disease annotation study of gene signatures in a breast cancer microarray dataset F Gypas, ES Bei, M Zervakis, S Sfakianakis 2011 Annual International Conference of the IEEE Engineering in Medicine and …, 2011	2	2011
ZARP: A user-friendly and versatile RNA-seq analysis workflow M Katsantoni, F Gypas, CJ Herrmann, D Burri, M Bąk, P Iborra, K Agarwal, ... F1000Research 13, 533, 2024	1	2024
Computational methods for the identification and quantification of transcript isoforms from next generation sequencing data F Gypas University_of_Basel, 2018		2018
Human microbiome and the methods of its study – metagenomics. F Gypas, ΑFA Mentis Acta Microbiologica Hellenica 59 (2), 7-16, 2014		2014

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