Comprehensive characterization of cancer driver genes and mutations MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta, D Bertrand, ... Cell 173 (2), 371-385. e18, 2018 | 2439 | 2018 |
Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes R Gao, S Bai, YC Henderson, Y Lin, A Schalck, Y Yan, T Kumar, M Hu, ... Nature biotechnology 39 (5), 599-608, 2021 | 530 | 2021 |
Systematic analysis of splice-site-creating mutations in cancer RG Jayasinghe, S Cao, Q Gao, MC Wendl, NS Vo, SM Reynolds, Y Zhao, ... Cell reports 23 (1), 270-281. e3, 2018 | 254 | 2018 |
Single-cell dissection of intratumoral heterogeneity and lineage diversity in metastatic gastric adenocarcinoma R Wang, M Dang, K Harada, G Han, F Wang, M Pool Pizzi, M Zhao, ... Nature medicine 27 (1), 141-151, 2021 | 194 | 2021 |
Targeting the αv integrin/TGF-β axis improves natural killer cell function against glioblastoma stem cells H Shaim, M Shanley, R Basar, M Daher, J Gumin, DB Zamler, N Uprety, ... The Journal of clinical investigation 131 (14), 2021 | 191 | 2021 |
QDMR: a quantitative method for identification of differentially methylated regions by entropy Y Zhang, H Liu, J Lv, X Xiao, J Zhu, X Liu, J Su, X Li, Q Wu, F Wang, Y Cui Nucleic acids research 39 (9), e58-e58, 2011 | 150 | 2011 |
Spatially restricted drivers and transitional cell populations cooperate with the microenvironment in untreated and chemo-resistant pancreatic cancer D Cui Zhou, RG Jayasinghe, S Chen, JM Herndon, MD Iglesia, P Navale, ... Nature genetics 54 (9), 1390-1405, 2022 | 147 | 2022 |
DiseaseMeth: a human disease methylation database J Lv, H Liu, J Su, X Wu, H Liu, B Li, X Xiao, F Wang, Q Wu, Y Zhang Nucleic acids research 40 (D1), D1030-D1035, 2012 | 115 | 2012 |
HHMD: the human histone modification database Y Zhang, J Lv, H Liu, J Zhu, J Su, Q Wu, Y Qi, F Wang, X Li Nucleic acids research 38 (suppl_1), D149-D154, 2010 | 109 | 2010 |
SEA: a super-enhancer archive Y Wei, S Zhang, S Shang, B Zhang, S Li, X Wang, F Wang, J Su, Q Wu, ... Nucleic acids research 44 (D1), D172-D179, 2016 | 101 | 2016 |
Systematic identification and annotation of human methylation marks based on bisulfite sequencing methylomes reveals distinct roles of cell type-specific hypomethylation in the … H Liu, X Liu, S Zhang, J Lv, S Li, S Shang, S Jia, Y Wei, F Wang, J Su, ... Nucleic acids research 44 (1), 75-94, 2016 | 91 | 2016 |
CpG_MPs: identification of CpG methylation patterns of genomic regions from high-throughput bisulfite sequencing data J Su, H Yan, Y Wei, H Liu, H Liu, F Wang, J Lv, Q Wu, Y Zhang Nucleic acids research 41 (1), e4-e4, 2013 | 67 | 2013 |
The identification of specific methylation patterns across different cancers C Zhang, H Zhao, J Li, H Liu, F Wang, Y Wei, J Su, D Zhang, T Liu, ... PloS one 10 (3), e0120361, 2015 | 66 | 2015 |
CpG_MI: a novel approach for identifying functional CpG islands in mammalian genomes J Su, Y Zhang, J Lv, H Liu, X Tang, F Wang, Y Qi, Y Feng, X Li Nucleic acids research 38 (1), e6-e6, 2010 | 56 | 2010 |
Group MCW MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta, D Bertrand, ... Cancer Genome Atlas Research N, Lawrence MS, Godzik A, Lopez-Bigas N, Stuart …, 2018 | 46 | 2018 |
MetaImprint: an information repository of mammalian imprinted genes Y Wei, J Su, H Liu, J Lv, F Wang, H Yan, Y Wen, H Liu, Q Wu, Y Zhang Development 141 (12), 2516-2523, 2014 | 46 | 2014 |
Latent periodic process inference from single-cell RNA-seq data S Liang, F Wang, J Han, K Chen Nature communications 11 (1), 1441, 2020 | 41 | 2020 |
SCMarker: ab initio marker selection for single cell transcriptome profiling F Wang, S Liang, T Kumar, N Navin, K Chen PLoS computational biology 15 (10), e1007445, 2019 | 35 | 2019 |
MEDALT: single-cell copy number lineage tracing enabling gene discovery F Wang, Q Wang, V Mohanty, S Liang, J Dou, J Han, DC Minussi, R Gao, ... Genome biology 22, 1-22, 2021 | 34 | 2021 |
Cell subpopulation deconvolution reveals breast cancer heterogeneity based on DNA methylation signature Y Wen, Y Wei, S Zhang, S Li, H Liu, F Wang, Y Zhao, D Zhang, Y Zhang Briefings in bioinformatics 18 (3), 426-440, 2017 | 29 | 2017 |