| Fast and effective prediction of microRNA/target duplexes M Rehmsmeier, P Steffen, M Höchsmann, R Giegerich Rna 10 (10), 1507-1517, 2004 | 2789 | 2004 |
| REPuter: the manifold applications of repeat analysis on a genomic scale S Kurtz, JV Choudhuri, E Ohlebusch, C Schleiermacher, J Stoye, ... Nucleic acids research 29 (22), 4633-4642, 2001 | 2108 | 2001 |
| GenDB—an open source genome annotation system for prokaryote genomes F Meyer, A Goesmann, AC McHardy, D Bartels, T Bekel, J Clausen, ... Nucleic acids research 31 (8), 2187-2195, 2003 | 847 | 2003 |
| A comprehensive comparison of comparative RNA structure prediction approaches PP Gardner, R Giegerich BMC bioinformatics 5, 1-18, 2004 | 487 | 2004 |
| Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics J Reeder, R Giegerich BMC bioinformatics 5, 1-12, 2004 | 399 | 2004 |
| RNAshapes: an integrated RNA analysis package based on abstract shapes P Steffen, B Voß, M Rehmsmeier, J Reeder, R Giegerich Bioinformatics 22 (4), 500-503, 2006 | 393 | 2006 |
| Local similarity in RNA secondary structures M Hochsmann, T Toller, R Giegerich, S Kurtz Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE …, 2003 | 328 | 2003 |
| Abstract shapes of RNA R Giegerich, B Voß, M Rehmsmeier Nucleic acids research 32 (16), 4843-4851, 2004 | 298 | 2004 |
| From Ukkonen to McCreight and Weiner: A unifying view of linear-time suffix tree construction R Giegerich, S Kurtz Algorithmica 19, 331-353, 1997 | 287 | 1997 |
| Analysis of RNA sequence structure maps by exhaustive enumeration. I W Grüner, R Giegerich, D Strothmann, C Reidys, J Weber, IL Hofacker, ... Monatshefte für Chemie 127, 355-389, 1996 | 267 | 1996 |
| GeneFisher-software support for the detection of postulated genes. R Giegerich, F Meyer, C Schleiermacher ISMB 4, 68-77, 1996 | 237 | 1996 |
| Pure multiple RNA secondary structure alignments: a progressive profile approach M Hochsmann, B Voss, R Giegerich IEEE/ACM transactions on computational biology and bioinformatics 1 (1), 53-62, 2004 | 200 | 2004 |
| Attribute coupled grammars H Ganzinger, R Giegerich ACM SIGPLAN Notices 19 (6), 157-170, 1984 | 176 | 1984 |
| Fast index based algorithms and software for matching position specific scoring matrices M Beckstette, R Homann, R Giegerich, S Kurtz BMC bioinformatics 7, 1-25, 2006 | 173 | 2006 |
| pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows J Reeder, P Steffen, R Giegerich Nucleic acids research 35 (suppl_2), W320-W324, 2007 | 167 | 2007 |
| Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti1021 JP Schlüter, J Reinkensmeier, MJ Barnett, C Lang, E Krol, R Giegerich, ... BMC genomics 14, 1-21, 2013 | 166 | 2013 |
| The RNA shapes studio S Janssen, R Giegerich Bioinformatics 31 (3), 423-425, 2015 | 164 | 2015 |
| A discipline of dynamic programming over sequence data R Giegerich, C Meyer, P Steffen Science of Computer Programming 51 (3), 215-263, 2004 | 155 | 2004 |
| A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti JP Schlüter, J Reinkensmeier, S Daschkey, E Evguenieva-Hackenberg, ... BMC genomics 11, 1-35, 2010 | 138 | 2010 |
| Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction J Reeder, R Giegerich Bioinformatics 21 (17), 3516-3523, 2005 | 134 | 2005 |
