| Genome-wide estimates of transposable element insertion and deletion rates in Drosophila melanogaster JR Adrion, MJ Song, DR Schrider, MW Hahn, S Schaack Genome biology and evolution 9 (5), 1329-1340, 2017 | 74 | 2017 |
| Gene Balance Predicts Transcriptional Responses Immediately Following Ploidy Change in Arabidopsis thaliana MJ Song, BI Potter, JJ Doyle, JE Coate The Plant Cell 32 (5), 1434-1448, 2020 | 69 | 2020 |
| Variation in the Microbiota Associated with Daphnia magna Across Genotypes, Populations, and Temperature J Frankel-Bricker, MJ Song, MJ Benner, S Schaack Microbial ecology 79, 731-742, 2020 | 49 | 2020 |
| Expression‐level support for gene dosage sensitivity in three Glycine subgenus Glycine polyploids and their diploid progenitors JE Coate, MJ Song, A Bombarely, JJ Doyle New Phytologist 212 (4), 1083-1093, 2016 | 32 | 2016 |
| Evolutionary conflict between mobile DNA and host genomes MJ Song, S Schaack The American Naturalist 192 (2), 263-273, 2018 | 21 | 2018 |
| Polyploidy and microbiome associations mediate similar responses to pathogens in Arabidopsis EC Mehlferber, MJ Song, JN Pelaez, J Jaenisch, JE Coate, B Koskella, ... Current Biology 32 (12), 2719-2729. e5, 2022 | 19 | 2022 |
| A novel chloroplast gene reported for flagellate plants M Song, LY Kuo, L Huiet, KM Pryer, CJ Rothfels, FW Li American Journal of Botany 105 (1), 117-121, 2018 | 15 | 2018 |
| Whole genome duplication and dispersed duplication characterize the evolution of the plant PINOID gene family across plant species J Bai, MJ Song, J Gao, G Li Gene 829, 146494, 2022 | 10 | 2022 |
| Commonly used Bayesian diversification methods lead to biologically meaningful differences in branch-specific rates on empirical phylogenies J Martínez-Gómez, MJ Song, CM Tribble, BT Kopperud, WA Freyman, ... Evolution Letters 8 (2), 189-199, 2024 | 6 | 2024 |
| First Record of the invasive Azolla pinnata subsp. pinnata (Salviniaceae) in California. MJ Song, M Huynh, S Lahmeyer, M Sedaghatpour American Fern Journal 113 (1), 56-57, 2023 | 4 | 2023 |
| Commonly used Bayesian diversification-rate models produce biologically meaningful differences on empirical phylogenies J Martínez-Gómez, MJ Song, CM Tribble, BT Kopperud, WA Freyman, ... bioRxiv, 2023.05. 17.541228, 2023 | 3 | 2023 |
| The genome assembly of the duckweed fern, Azolla caroliniana MJ Song, FW Li, F Freund, M Escalona, E Toffelmier, C Miller, ... bioRxiv, 2024.10. 22.619683, 2024 | 1 | 2024 |
| The nitrogen-fixing fern Azolla has a complex microbiome characterized by multiple modes of transmission MJ Song, FW Li, F Freund, CM Tribble, E Toffelmier, C Miller, HB Shaffer, ... bioRxiv, 2024.05. 20.592813, 2024 | 1 | 2024 |
| The microbiome of Calasterella californica is shaped mostly by the genetics of the host thalli I González-Ramírez, MJ Song, BD Mishler bioRxiv, 2025.01. 23.634585, 2025 | | 2025 |
| Shorter Note MJ Song, S Pirro, S Lahmeyer, K Kyle, M White American Fern Journal 114 (4), 334-336, 2024 | | 2024 |
| A genome assembly for the California endemic liverwort Calasterella californica IS González-Ramírez, M Escalona, C Miller, N Chumchim, ... Journal of Heredity, esae065, 2024 | | 2024 |
| Resolving Deep Relationships and Revealing Ancient Whole-Genome Duplications in Pteridaceae using Transcriptomic Data MJ Song, CJ Rothfels, E Schuettpelz, J Nitta, L Huiet, FW Li, ... American Fern Journal 113 (3), 191-210, 2023 | | 2023 |
| Induction of autotetraploidy and microbiome associations mediate differential responses to pathogens EC Mehlferber, MJ Song, JN Pelaez, J Jaenisch, JE Coate, B Koskella, ... bioRxiv, 2021.10. 01.462589, 2021 | | 2021 |
| Gene Balance Predicts Transcriptional Responses Immediately Following Ploidy Change In Arabidopsis thaliana B Potter, MJ Song, JJ Doyle, JE Coate bioRxiv, 795328, 2019 | | 2019 |
| The nitrogen‐fixing fern Azolla has a complex microbiome characterized by varying degrees of cophylogenetic signal MJ Song, F Freund, CM Tribble, E Toffelmier, C Miller, H Bradley Shaffer, ... American Journal of Botany, e70010, 0 | | |
Carl RothfelsUtah State UniversityVerified email at berkeley.edu