Articles with public access mandates - Aurélien DugourdLearn more
Available somewhere: 36
The global phosphorylation landscape of SARS-CoV-2 infection
M Bouhaddou, D Memon, B Meyer, KM White, VV Rezelj, MC Marrero, ...
Cell 182 (3), 685-712. e19, 2020
Mandates: US Department of Defense, US National Institutes of Health, German Research …
decoupleR: ensemble of computational methods to infer biological activities from omics data
P Badia-i-Mompel, J Vélez Santiago, J Braunger, C Geiss, D Dimitrov, ...
Bioinformatics advances 2 (1), vbac016, 2022
Mandates: European Commission
Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data
D Dimitrov, D Türei, M Garrido-Rodriguez, PL Burmedi, JS Nagai, C Boys, ...
Nature communications 13 (1), 3224, 2022
Mandates: German Research Foundation, European Commission, Federal Ministry of …
Gli1+ mesenchymal stromal cells are a key driver of bone marrow fibrosis and an important cellular therapeutic target
RK Schneider, A Mullally, A Dugourd, F Peisker, R Hoogenboezem, ...
Cell stem cell 20 (6), 785-800. e8, 2017
Mandates: US National Institutes of Health, American Heart Association, German …
NADH shuttling couples cytosolic reductive carboxylation of glutamine with glycolysis in cells with mitochondrial dysfunction
E Gaude, C Schmidt, PA Gammage, A Dugourd, T Blacker, SP Chew, ...
Molecular cell 69 (4), 581-593. e7, 2018
Mandates: UK Biotechnology and Biological Sciences Research Council, UK Medical …
MaBoSS 2.0: an environment for stochastic Boolean modeling
G Stoll, B Caron, E Viara, A Dugourd, A Zinovyev, A Naldi, G Kroemer, ...
Bioinformatics 33 (14), 2226-2228, 2017
Mandates: European Commission
Dynamic 3D proteomes reveal protein functional alterations at high resolution in situ
V Cappelletti, T Hauser, I Piazza, M Pepelnjak, L Malinovska, T Fuhrer, ...
Cell 184 (2), 545-559. e22, 2021
Mandates: Swiss National Science Foundation, Swedish Research Council, European Commission
Causal integration of multi‐omics data with prior knowledge to generate mechanistic hypotheses
A Dugourd, C Kuppe, M Sciacovelli, E Gjerga, A Gabor, KB Emdal, ...
Molecular Systems Biology 17 (1), e9730, 2021
Mandates: German Research Foundation, Danish Council for Independent Research, UK …
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms
M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ...
Molecular systems biology 17 (10), e10387, 2021
Mandates: US Department of Energy, US National Institutes of Health, European …
Increased CXCL4 expression in hematopoietic cells links inflammation and progression of bone marrow fibrosis in MPN
HFE Gleitz, AJF Dugourd, NB Leimkühler, IAM Snoeren, SNR Fuchs, ...
Blood, The Journal of the American Society of Hematology 136 (18), 2051-2064, 2020
Mandates: German Research Foundation, European Commission, Dutch Cancer Society
Metabolic communication by SGLT2 inhibition
AM Billing, YC Kim, S Gullaksen, B Schrage, J Raabe, A Hutzfeldt, ...
Circulation 149 (11), 860-884, 2024
Mandates: US National Institutes of Health, US Department of Veterans Affairs, German …
Footprint-based functional analysis of multiomic data
A Dugourd, J Saez-Rodriguez
Current Opinion in Systems Biology 15, 82-90, 2019
Mandates: European Commission
SREBP1-induced fatty acid synthesis depletes macrophages antioxidant defences to promote their alternative activation
G Bidault, S Virtue, K Petkevicius, HE Jolin, A Dugourd, AC Guénantin, ...
Nature metabolism 3 (9), 1150-1162, 2021
Mandates: Science Foundation Ireland, British Heart Foundation, UK Medical Research …
Reducing lipid bilayer stress by monounsaturated fatty acids protects renal proximal tubules in diabetes
A Pérez-Martí, S Ramakrishnan, J Li, A Dugourd, MR Molenaar, ...
Elife 11, e74391, 2022
Mandates: Swiss National Science Foundation, German Research Foundation, European …
Converting networks to predictive logic models from perturbation signalling data with CellNOpt
E Gjerga, P Trairatphisan, A Gabor, H Koch, C Chevalier, F Ceccarelli, ...
Bioinformatics 36 (16), 4523-4524, 2020
Mandates: European Commission
PHONEMeS: efficient modeling of signaling networks derived from large-scale mass spectrometry data
E Gjerga, A Dugourd, L Tobalina, A Sousa, J Saez-Rodriguez
Journal of Proteome Research 20 (4), 2138-2144, 2021
Mandates: European Commission
Kinetic modelling of quantitative proteome data predicts metabolic reprogramming of liver cancer
N Berndt, A Egners, G Mastrobuoni, O Vvedenskaya, A Fragoulis, ...
British Journal of Cancer 122 (2), 233-244, 2020
Mandates: German Research Foundation, European Commission, Federal Ministry of …
LIANA+: an all-in-one cell-cell communication framework
D Dimitrov, PSL Schäfer, E Farr, P Rodriguez Mier, S Lobentanzer, ...
BioRxiv, 2023.08. 19.553863, 2023
Mandates: German Research Foundation, European Commission
Dynamic partitioning of branched-chain amino acids-derived nitrogen supports renal cancer progression
M Sciacovelli, A Dugourd, LV Jimenez, M Yang, E Nikitopoulou, ...
Nature communications 13 (1), 7830, 2022
Mandates: Cancer Research UK, UK Medical Research Council, National Institute for …
Pan‐Cancer landscape of protein activities identifies drivers of signalling dysregulation and patient survival
A Sousa, A Dugourd, D Memon, B Petursson, E Petsalaki, ...
Molecular Systems Biology 19 (3), e10631, 2023
Mandates: European Molecular Biology Laboratory, Fundação para a Ciência e a …
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