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Jon Agirre
Jon Agirre
Royal Society University Research Fellow at York Structural Biology Laboratory, University of York
Verified email at york.ac.uk - Homepage
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Cited by
Cited by
Year
CCP4i2: the new graphical user interface to the CCP4 program suite
L Potterton, J Agirre, C Ballard, K Cowtan, E Dodson, PR Evans, ...
Acta Crystallographica Section D: Structural Biology 74 (2), 68-84, 2018
4922018
Carbohydrate–aromatic interactions in proteins
KL Hudson, GJ Bartlett, RC Diehl, J Agirre, T Gallagher, LL Kiessling, ...
Journal of the American Chemical Society 137 (48), 15152-15160, 2015
3992015
Privateer: software for the conformational validation of carbohydrate structures
J Agirre, J Iglesias-Fernández, C Rovira, GJ Davies, KS Wilson, ...
Nature structural & molecular biology 22 (11), 833-834, 2015
3542015
The CCP4 suite: integrative software for macromolecular crystallography
J Agirre, M Atanasova, H Bagdonas, CB Ballard, A Baslé, ...
Acta Crystallographica Section D: Structural Biology 79 (6), 449-461, 2023
2972023
Probing the biophysical interplay between a viral genome and its capsid
J Snijder, C Uetrecht, RJ Rose, R Sanchez-Eugenia, GA Marti, J Agirre, ...
Nature chemistry 5 (6), 502-509, 2013
1432013
The ever changing moods of calmodulin: how structural plasticity entails transductional adaptability
A Villarroel, M Taglialatela, G Bernardo-Seisdedos, A Alaimo, J Agirre, ...
Journal of molecular biology 426 (15), 2717-2735, 2014
1052014
Carbohydrate anomalies in the PDB
J Agirre, G Davies, K Wilson, K Cowtan
Nature chemical biology 11 (5), 303-303, 2015
912015
The case for post-predictional modifications in the AlphaFold Protein Structure Database
H Bagdonas, CA Fogarty, E Fadda, J Agirre
Nature structural & molecular biology 28 (11), 869-870, 2021
762021
Strategies for carbohydrate model building, refinement and validation
J Agirre
Acta Crystallographica Section D: Structural Biology 73 (2), 171-186, 2017
612017
Three-dimensional structures of two heavily N-glycosylated Aspergillus sp. family GH3 β-d-glucosidases
J Agirre, A Ariza, WA Offen, JP Turkenburg, SM Roberts, S McNicholas, ...
Acta Crystallographica Section D: Structural Biology 72 (2), 254-265, 2016
542016
Structure of the Triatoma virus capsid
G Squires, J Pous, J Agirre, GS Rozas-Dennis, MD Costabel, GA Marti, ...
Acta Crystallographica Section D: Biological Crystallography 69 (6), 1026-1037, 2013
532013
Capsid protein identification and analysis of mature Triatoma virus (TrV) virions and naturally occurring empty particles
J Agirre, K Aloria, JM Arizmendi, I Iloro, F Elortza, R Sánchez-Eugenia, ...
Virology 409 (1), 91-101, 2011
512011
The molecular basis of endolytic activity of a multidomain alginate lyase from Defluviitalea phaphyphila, a representative of a new lyase family, PL39
S Ji, SR Dix, AA Aziz, SE Sedelnikova, PJ Baker, JB Rafferty, PA Bullough, ...
Journal of Biological Chemistry 294 (48), 18077-18091, 2019
492019
CCP4 Cloud for structure determination and project management in macromolecular crystallography
E Krissinel, AA Lebedev, V Uski, CB Ballard, RM Keegan, O Kovalevskiy, ...
Acta Crystallographica Section D: Structural Biology 78 (9), 1079-1089, 2022
402022
Carbohydrate structure: the rocky road to automation
J Agirre, GJ Davies, KS Wilson, KD Cowtan
Current Opinion in Structural Biology 44, 39-47, 2017
402017
Cryo-electron microscopy reconstructions of triatoma virus particles: a clue to unravel genome delivery and capsid disassembly
J Agirre, G Goret, M LeGoff, R Sanchez-Eugenia, GA Marti, J Navaza, ...
Journal of General Virology 94 (5), 1058-1068, 2013
312013
Structural basis of glycogen biosynthesis regulation in bacteria
JO Cifuente, N Comino, J Madariaga-Marcos, S López-Fernández, ...
Structure 24 (9), 1613-1622, 2016
292016
Glycoblocks: a schematic three-dimensional representation for glycans and their interactions
S McNicholas, J Agirre
Biological Crystallography 73 (2), 187-194, 2017
282017
The structure of the AliC GH13 α-amylase from Alicyclobacillus sp. reveals the accommodation of starch branching points in the α-amylase family
J Agirre, O Moroz, S Meier, J Brask, A Munch, T Hoff, C Andersen, ...
Acta Crystallographica Section D: Structural Biology 75 (1), 1-7, 2019
272019
Structural glycobiology in the age of electron cryo-microscopy
M Atanasova, H Bagdonas, J Agirre
Current opinion in structural biology 62, 70-78, 2020
262020
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