| Lytic to temperate switching of viral communities B Knowles, CB Silveira, BA Bailey, K Barott, VA Cantu, ... Nature 531 (7595), 466-470, 2016 | 560 | 2016 |
| Metagenomic analysis of viruses in reclaimed water K Rosario, C Nilsson, YW Lim, Y Ruan, M Breitbart Environmental microbiology 11 (11), 2806-2820, 2009 | 340 | 2009 |
| Global microbialization of coral reefs AF Haas, MFM Fairoz, LW Kelly, CE Nelson, EA Dinsdale, RA Edwards, ... Nature microbiology 1 (6), 1-7, 2016 | 283 | 2016 |
| TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets R Schmieder, YW Lim, F Rohwer, R Edwards BMC bioinformatics 11, 1-14, 2010 | 278 | 2010 |
| Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors LW Kelly, GJ Williams, KL Barott, CA Carlson, EA Dinsdale, RA Edwards, ... Proceedings of the National Academy of Sciences 111 (28), 10227-10232, 2014 | 239 | 2014 |
| Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes TFF Ng, DL Willner, YW Lim, R Schmieder, B Chau, C Nilsson, S Anthony, ... PloS one 6 (6), e20579, 2011 | 239 | 2011 |
| Identification and removal of ribosomal RNA sequences from metatranscriptomes R Schmieder, YW Lim, R Edwards Bioinformatics 28 (3), 433-435, 2012 | 238 | 2012 |
| Spatial distribution of microbial communities in the cystic fibrosis lung D Willner, MR Haynes, M Furlan, R Schmieder, YW Lim, PB Rainey, ... The ISME journal 6 (2), 471-474, 2012 | 207 | 2012 |
| Metagenomics and metatranscriptomics: windows on CF-associated viral and microbial communities YW Lim, R Schmieder, M Haynes, D Willner, M Furlan, M Youle, K Abbott, ... Journal of Cystic Fibrosis 12 (2), 154-164, 2013 | 193 | 2013 |
| Clinical insights from metagenomic analysis of sputum samples from patients with cystic fibrosis YW Lim, JS Evangelista III, R Schmieder, B Bailey, M Haynes, M Furlan, ... Journal of clinical microbiology 52 (2), 425-437, 2014 | 148 | 2014 |
| Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2, 3-butanedione fermentation KL Whiteson, S Meinardi, YW Lim, R Schmieder, H Maughan, R Quinn, ... The ISME journal 8 (6), 1247-1258, 2014 | 140 | 2014 |
| Biogeochemical forces shape the composition and physiology of polymicrobial communities in the cystic fibrosis lung RA Quinn, YW Lim, H Maughan, D Conrad, F Rohwer, KL Whiteson MBio 5 (2), 10.1128/mbio. 00956-13, 2014 | 127 | 2014 |
| The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography KL Whiteson, B Bailey, M Bergkessel, D Conrad, L Delhaes, B Felts, ... American journal of respiratory and critical care medicine 189 (11), 1309-1315, 2014 | 123 | 2014 |
| Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung D Willner, MR Haynes, M Furlan, N Hanson, B Kirby, YW Lim, PB Rainey, ... American journal of respiratory cell and molecular biology 46 (2), 127-131, 2012 | 120 | 2012 |
| Three-dimensional microbiome and metabolome cartography of a diseased human lung N Garg, M Wang, E Hyde, RR da Silva, AV Melnik, I Protsyuk, ... Cell host & microbe 22 (5), 705-716. e4, 2017 | 117 | 2017 |
| A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation RA Quinn, K Whiteson, YW Lim, P Salamon, B Bailey, S Mienardi, ... The ISME journal 9 (4), 1024-1038, 2015 | 111 | 2015 |
| Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome RA Quinn, VV Phelan, KL Whiteson, N Garg, BA Bailey, YW Lim, ... The ISME journal 10 (6), 1483-1498, 2016 | 110 | 2016 |
| Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures N Garg, CA Kapono, YW Lim, N Koyama, MJA Vermeij, D Conrad, ... International journal of mass spectrometry 377, 719-727, 2015 | 107 | 2015 |
| Ecological networking of cystic fibrosis lung infections RA Quinn, K Whiteson, YW Lim, J Zhao, D Conrad, JJ LiPuma, F Rohwer, ... NPJ biofilms and microbiomes 2 (1), 4, 2016 | 93 | 2016 |
| Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence RA Quinn, MJA Vermeij, AC Hartmann, I Galtier d'Auriac, S Benler, ... Proceedings of the Royal Society B: Biological Sciences 283 (1829), 20160469, 2016 | 79 | 2016 |
