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Youping Deng
Youping Deng
Verified email at hawaii.edu
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Year
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
L Shi, G Campbell, WD Jones, F Campagne, Z Wen, SJ Walker, Z Su, ...
Nature biotechnology 28 (8), 827-838, 2010
8832010
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
Nature biotechnology 32 (9), 903-914, 2014
8732014
The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance
C Wang, B Gong, PR Bushel, J Thierry-Mieg, D Thierry-Mieg, J Xu, ...
Nature biotechnology 32 (9), 926-932, 2014
5582014
Risk factors associated with clinical outcomes in 323 coronavirus disease 2019 (COVID-19) hospitalized patients in Wuhan, China
L Hu, S Chen, Y Fu, Z Gao, H Long, H Ren, Y Zuo, J Wang, H Li, Q Xu, ...
Clinical infectious diseases 71 (16), 2089-2098, 2020
5002020
Comparison of RNA-seq and microarray-based models for clinical endpoint prediction
W Zhang, Y Yu, F Hertwig, J Thierry-Mieg, W Zhang, D Thierry-Mieg, ...
Genome biology 16, 1-12, 2015
4222015
Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes
H Jiang, Y Deng, HS Chen, L Tao, Q Sha, J Chen, CJ Tsai, S Zhang
BMC bioinformatics 5, 1-12, 2004
3952004
A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data
J Luo, M Schumacher, A Scherer, D Sanoudou, D Megherbi, T Davison, ...
The pharmacogenomics journal 10 (4), 278-291, 2010
3642010
A comparative study of different machine learning methods on microarray gene expression data
M Pirooznia, JY Yang, MQ Yang, Y Deng
BMC genomics 9, 1-13, 2008
3562008
Incremental genetic K-means algorithm and its application in gene expression data analysis
Y Lu, S Lu, F Fotouhi, Y Deng, SJ Brown
BMC bioinformatics 5, 1-10, 2004
2602004
Identification of plasma lipid biomarkers for prostate cancer by lipidomics and bioinformatics
X Zhou, J Mao, J Ai, Y Deng, MR Roth, C Pound, J Henegar, R Welti, ...
PloS one 7 (11), e48889, 2012
2352012
FGKA: A fast genetic k-means clustering algorithm
Y Lu, S Lu, F Fotouhi, Y Deng, SJ Brown
Proceedings of the 2004 ACM symposium on Applied computing, 622-623, 2004
2302004
GeneVenn-A web application for comparing gene lists using Venn diagrams
M Pirooznia, V Nagarajan, Y Deng
Bioinformation 1 (10), 420, 2007
2162007
Extensive pyrosequencing reveals frequent intra-genomic variations of internal transcribed spacer regions of nuclear ribosomal DNA
J Song, L Shi, D Li, Y Sun, Y Niu, Z Chen, H Luo, X Pang, Z Sun, C Liu, ...
Public Library of Science 7 (8), e43971, 2012
2022012
Hedgehog signaling induces osteosarcoma development through Yap1 and H19 overexpression
LH Chan, W Wang, W Yeung, Y Deng, P Yuan, KK Mak
Oncogene 33 (40), 4857-4866, 2014
1772014
Recent advances in clustering methods for protein interaction networks
J Wang, M Li, Y Deng, Y Pan
BMC genomics 11 (Suppl 3), S10, 2010
1752010
Grb10, a positive, stimulatory signaling adapter in platelet-derived growth factor BB-, insulin-like growth factor I-, and insulin-mediated mitogenesis
J Wang, H Dai, N Yousaf, M Moussaif, Y Deng, A Boufelliga, OR Swamy, ...
Molecular and cellular biology, 1999
1441999
Molecular Basis of Plant Gene Expression During Aphid Invasion: Wheat Pto- and Pti-Like Sequences Are Involved in Interactions Between Wheat and Russian …
EV Boyko, CM Smith, VK Thara, JM Bruno, Y Deng, SR Starkey, ...
Journal of Economic Entomology 99 (4), 1430-1445, 2006
1282006
Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks
P Li, C Zhang, EJ Perkins, P Gong, Y Deng
BMC bioinformatics 8, 1-8, 2007
1242007
Plasma lipidomics profiling identified lipid biomarkers in distinguishing early-stage breast cancer from benign lesions
X Chen, H Chen, M Dai, J Ai, Y Li, B Mahon, S Dai, Y Deng
Oncotarget 7 (24), 36622, 2016
1192016
Epicardial adipose tissue has a unique transcriptome modified in severe coronary artery disease
EA McAninch, TL Fonseca, R Poggioli, AL Panos, TA Salerno, Y Deng, ...
Obesity 23 (6), 1267-1278, 2015
1192015
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Articles 1–20