Articles with public access mandates - Tal PupkoLearn more
Available somewhere: 31
GUIDANCE: a web server for assessing alignment confidence scores
O Penn, E Privman, H Ashkenazy, G Landan, D Graur, T Pupko
Nucleic acids research 38 (suppl_2), W23-W28, 2010
Mandates: US National Institutes of Health
An alignment confidence score capturing robustness to guide tree uncertainty
O Penn, E Privman, G Landan, D Graur, T Pupko
Molecular biology and evolution 27 (8), 1759-1767, 2010
Mandates: US National Institutes of Health
Genomic analysis of 38 Legionella species identifies large and diverse effector repertoires
D Burstein, F Amaro, T Zusman, Z Lifshitz, O Cohen, JA Gilbert, T Pupko, ...
Nature genetics 48 (2), 167-175, 2016
Mandates: US National Science Foundation, US National Institutes of Health, Government …
Epitopia: a web-server for predicting B-cell epitopes
ND Rubinstein, I Mayrose, E Martz, T Pupko
BMC bioinformatics 10, 1-6, 2009
Mandates: Cancer Research UK
The interface of protein structure, protein biophysics, and molecular evolution
DA Liberles, SA Teichmann, I Bahar, U Bastolla, J Bloom, ...
Protein Science 21 (6), 769-785, 2012
Mandates: US National Institutes of Health
Combined analysis of variation in core, accessory and regulatory genome regions provides a super-resolution view into the evolution of bacterial populations
A McNally, Y Oren, D Kelly, B Pascoe, S Dunn, T Sreecharan, M Vehkala, ...
PLoS genetics 12 (9), e1006280, 2016
Mandates: German Research Foundation, Academy of Finland, UK Biotechnology and …
Computational modeling and experimental validation of the Legionella and Coxiella virulence-related type-IVB secretion signal
Z Lifshitz, D Burstein, M Peeri, T Zusman, K Schwartz, HA Shuman, ...
Proceedings of the National Academy of Sciences 110 (8), E707-E715, 2013
Mandates: US National Institutes of Health
SMARCA2 and other genome-wide supported schizophrenia-associated genes: regulation by REST/NRSF, network organization and primate-specific evolution
Y Loe-Mie, AM Lepagnol-Bestel, G Maussion, A Doron-Faigenboim, ...
Human molecular genetics 19 (14), 2841-2857, 2010
Mandates: National Institute of Health and Medical Research, France
Transfer of noncoding DNA drives regulatory rewiring in bacteria
Y Oren, MB Smith, NI Johns, M Kaplan Zeevi, D Biran, EZ Ron, ...
Proceedings of the National Academy of Sciences 111 (45), 16112-16117, 2014
Mandates: US National Institutes of Health, Academy of Finland, European Commission
Type III secretion system effectors form robust and flexible intracellular virulence networks
D Ruano-Gallego, J Sanchez-Garrido, Z Kozik, E Nunez-Berrueco, ...
Science 371 (6534), eabc9531, 2021
Mandates: Cancer Research UK, UK Medical Research Council, Wellcome Trust, Government …
Identification of novel Xanthomonas euvesicatoria type III effector proteins by a machine‐learning approach
D Teper, D Burstein, D Salomon, M Gershovitz, T Pupko, G Sessa
Molecular Plant Pathology 17 (3), 398-411, 2016
Mandates: European Commission
Identification of novel Coxiella burnetii Icm/Dot effectors and genetic analysis of their involvement in modulating a mitogen-activated protein kinase pathway
Z Lifshitz, D Burstein, K Schwartz, HA Shuman, T Pupko, G Segal
Infection and immunity 82 (9), 3740-3752, 2014
Mandates: US National Institutes of Health
Phage display peptide libraries: deviations from randomness and correctives
A Ryvkin, H Ashkenazy, Y Weiss-Ottolenghi, C Piller, T Pupko, ...
Nucleic acids research 46 (9), e52-e52, 2018
Mandates: US National Institutes of Health, US Department of Agriculture
A machine learning approach to identify hydrogenosomal proteins in Trichomonas vaginalis
D Burstein, SB Gould, V Zimorski, T Kloesges, F Kiosse, P Major, ...
Eukaryotic Cell 11 (2), 217-228, 2012
Mandates: German Research Foundation
Show me your secret(ed) weapons: a multifaceted approach reveals a wide arsenal of type III‐secreted effectors in the cucurbit pathogenic bacterium Acidovorax citrulli and …
I Jiménez‐Guerrero, F Pérez‐Montaño, GM Da Silva, N Wagner, ...
Molecular plant pathology 21 (1), 17-37, 2020
Mandates: US Department of Energy, Government of Spain
Multiple sequence alignment averaging improves phylogeny reconstruction
H Ashkenazy, I Sela, E Levy Karin, G Landan, T Pupko
Systematic biology 68 (1), 117-130, 2019
Mandates: US National Institutes of Health, European Commission
Revealing bacterial targets of growth inhibitors encoded by bacteriophage T7
S Molshanski-Mor, I Yosef, R Kiro, R Edgar, M Manor, M Gershovits, ...
Proceedings of the National Academy of Sciences 111 (52), 18715-18720, 2014
Mandates: European Commission
The cytoskeleton of parabasalian parasites comprises proteins that share properties common to intermediate filament proteins
H Preisner, EL Karin, G Poschmann, K Stühler, T Pupko, SB Gould
Protist 167 (6), 526-543, 2016
Mandates: German Research Foundation, Federal Ministry of Education and Research, Germany
Insights from the Genome Sequence of Acidovorax citrulli M6, a Group I Strain of the Causal Agent of Bacterial Fruit Blotch of Cucurbits
N Eckshtain-Levi, D Shkedy, M Gershovits, GM Da Silva, D Tamir-Ariel, ...
Frontiers in microbiology 7, 430, 2016
Mandates: US Department of Agriculture
Sequence analysis of malacoherpesvirus proteins: Pan-herpesvirus capsid module and replication enzymes with an ancient connection to “Megavirales”
A Mushegian, EL Karin, T Pupko
Virology 513, 114-128, 2018
Mandates: US National Science Foundation
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