Simon Kasif

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Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at jhu.edu
T. M. MuraliDepartment of Computer Science, Virginia TechVerified email at cs.vt.edu
Dr. John RachlinNortheastern UniversityVerified email at northeastern.edu
Owen WhiteDirector of Bioinformatics, Institute for Genome Sciences, Professor, Department of Epidemiology and Preventative, University ofVerified email at som.umaryland.edu
Bradley BernsteinProfessor of Pathology, Harvard UniversityVerified email at broadinstitute.org
Sreerama MurthyCEO & Chief Data Scientist, QuadratyxVerified email at quadratyx.com
Martin SteffenBoston UniversityVerified email at bu.edu
Timothy GardnerCytivaVerified email at cytiva.com
Chunming Ding 丁春明Wenzhou Medical UniversityVerified email at wmu.edu.cn
Geoffrey M CooperProfessor Emeritus of Biology, Boston UniversityVerified email at bu.edu
John W. TullaiLecturer in Neuroscience and Biology, Boston UniversityVerified email at bu.edu
Manway LiuPrognomiQVerified email at google.com
Richard BeigelTemple UniversityVerified email at temple.edu
Mary Elizabeth PattiInvestigator, Joslin Diabetes Center; Associate Professor, Harvard Medical SchoolVerified email at joslin.harvard.edu
Isaac KohaneHarvard Medical School, Children's Hospital, Brigham and Women's HospitalVerified email at hms.harvard.edu
Mario L. SuvaAssociate Professor, Massachusetts General Hospital, Broad Institute, Harvard Medical SchoolVerified email at mgh.harvard.edu
Jonathan M DreyfussJoslin Diabetes CenterVerified email at joslin.harvard.edu
C. Ronald KahnJoslin Diabetes Center and Harvard Medical SchoolVerified email at joslin.harvard.edu
Ashutosh GargEightfold.aiVerified email at eightfold.ai
Jeremiah FaithIcahn School of Medicine at Mount SinaiVerified email at mssm.edu

Simon Kasif

Professor of Biomedical Engineering, Computer Science and Bioinformatics, Boston University

Verified email at bu.edu - Homepage

Functional Genomics Computational Biology Artificial Intelligence Knowledge Representation


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Initial sequencing and analysis of the human genome US DOE Joint Genome Institute: Hawkins Trevor 4 Branscomb Elbert 4 Predki ... nature 409 (6822), 860-921, 2001	31558	2001
Improved microbial gene identification with GLIMMER AL Delcher, D Harmon, S Kasif, O White, SL Salzberg Nucleic acids research 27 (23), 4636-4641, 1999	3008	1999
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles JJ Faith, B Hayete, JT Thaden, I Mogno, J Wierzbowski, G Cottarel, ... PLoS biology 5 (1), e8, 2007	1952	2007
Microbial gene identification using interpolated Markov models SL Salzberg, AL Delcher, S Kasif, O White Nucleic acids research 26 (2), 544-548, 1998	1362	1998
A system for induction of oblique decision trees SK Murthy, S Kasif, S Salzberg Journal of artificial intelligence research 2, 1-32, 1994	1354	1994
Alignment of whole genomes AL Delcher, S Kasif, RD Fleischmann, J Peterson, O White, SL Salzberg Nucleic acids research 27 (11), 2369-2376, 1999	1289	1999
Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains M Ku, RP Koche, E Rheinbay, EM Mendenhall, M Endoh, TS Mikkelsen, ... PLoS genetics 4 (10), e1000242, 2008	1190	2008
Reconstructing and reprogramming the tumor-propagating potential of glioblastoma stem-like cells ML Suvà, E Rheinbay, SM Gillespie, AP Patel, H Wakimoto, SD Rabkin, ... Cell 157 (3), 580-594, 2014	992	2014
Extracting conserved gene expression motifs from gene expression data TM Murali, S Kasif Biocomputing 2003, 77-88, 2002	565	2002
Predicting protein function from protein/protein interaction data: a probabilistic approach S Letovsky, S Kasif Bioinformatics 19 (suppl_1), i197-i204, 2003	515	2003
Deep sequencing of the oral microbiome reveals signatures of periodontal disease B Liu, LL Faller, N Klitgord, V Mazumdar, M Ghodsi, DD Sommer, ... PloS one 7 (6), e37919, 2012	495	2012
Whole-genome annotation by using evidence integration in functional-linkage networks U Karaoz, TM Murali, S Letovsky, Y Zheng, C Ding, CR Cantor, S Kasif Proceedings of the National Academy of Sciences 101 (9), 2888-2893, 2004	423	2004
An aberrant transcription factor network essential for Wnt signaling and stem cell maintenance in glioblastoma E Rheinbay, ML Suvà, SM Gillespie, H Wakimoto, AP Patel, M Shahid, ... Cell reports 3 (5), 1567-1579, 2013	332	2013
OC1: A randomized algorithm for building oblique decision trees SK Murthy, S Kasif, S Salzberg, R Beigel Proceedings of AAAI 93, 322-327, 1993	284	1993
Immediate-early and delayed primary response genes are distinct in function and genomic architecture JW Tullai, ME Schaffer, S Mullenbrock, G Sholder, S Kasif, GM Cooper Journal of Biological Chemistry 282 (33), 23981-23995, 2007	264	2007
Induction of oblique decision trees D Heath, S Kasif, S Salzberg IJCAI 1993, 1002-1007, 1993	248	1993
RankGene: identification of diagnostic genes based on expression data Y Su, TM Murali, V Pavlovic, M Schaffer, S Kasif Bioinformatics 19 (12), 1578-1579, 2003	243	2003
Network-based analysis of affected biological processes in type 2 diabetes models M Liu, A Liberzon, SW Kong, WR Lai, PJ Park, IS Kohane, S Kasif PLoS genetics 3 (6), e96, 2007	228	2007
On the parallel complexity of discrete relaxation in constraint satisfaction networks S Kasif Artificial Intelligence 45 (3), 275-286, 1990	219	1990
Computational identification of operons in microbial genomes Y Zheng, JD Szustakowski, L Fortnow, RJ Roberts, S Kasif Genome research 12 (8), 1221-1230, 2002	200	2002

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