Panagiotis Alexiou

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Emmanouil (Manolis) MaragkakisStadtman Principal Investigator, NIA/NIHVerified email at nih.gov
Artemis HatzigeorgiouProfessor of Bioinformatics, University of ThessalyVerified email at inf.uth.gr
Martin ReczkoBiomedical Sciences Research Center Alexander FlemingVerified email at fleming.gr
Zissimos MourelatosProfessor of Pathology & Laboratory Medicine, University of Pennsylvania, Perelman School of MedicineVerified email at uphs.upenn.edu
Theodore DalamagasAthena Research CenterVerified email at imis.athena-innovation.gr
Thanasis VergoulisIMSI, "Athena" RC, GreeceVerified email at athenarc.gr
Nectarios KozirisProfessor, fmr Dean of the School of Electrical & Computer Engineering, NTUAVerified email at cslab.ece.ntua.gr
Timos SellisAthena Research CenterVerified email at athenarc.gr
Kornilios KourtisIsovalentVerified email at isovalent.com
Anastassios (Anastasios) VourekasAssistant Professor at Louisiana State UniversityVerified email at lsu.edu
George GeorgakilasUniversity of Pennsylvania School of MedicineVerified email at pennmedicine.upenn.edu
Giorgos GiannopoulosImsi Institute, Athena R.C.Verified email at athenarc.gr
Vangelis KoukisComputing Systems Laboratory, National Technical University of AthensVerified email at cslab.ece.ntua.gr
Panayiotis TsanakasProfessor, Dean of the School of Electrical and Computer Engineering, National Technical UniversityVerified email at cs.ntua.gr
Ivo GrosseProfessor of Bioinformatics, Martin Luther University Halle-WittenbergVerified email at informatik.uni-halle.de
Yohei KirinoThomas Jefferson UniversityVerified email at jefferson.edu
Katarína GrešováNational Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, CzechiaVerified email at mail.muni.cz
Zheng QiGene Therapy Program, University of PennsylvaniaVerified email at pennmedicine.upenn.edu
Brian D. GregoryProfessor of Biology, University of PennsylavaniaVerified email at sas.upenn.edu
Ioannis S VlachosSpatial Technologies Unit, Harvard Medical School, BIDMC, Broad Institute of MIT & HarvardVerified email at bidmc.harvard.edu

Panagiotis Alexiou

ERA Chair, University of Malta

Verified email at um.edu.mt

Bioinformatics


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DIANA-microT web server: elucidating microRNA functions through target prediction M Maragkakis, M Reczko, VA Simossis, P Alexiou, GL Papadopoulos, ... Nucleic acids research 37 (suppl_2), W273-W276, 2009	710	2009
Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer L Zhang, S Volinia, T Bonome, GA Calin, J Greshock, N Yang, CG Liu, ... Proceedings of the National Academy of Sciences 105 (19), 7004, 2008	709	2008
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support T Vergoulis, IS Vlachos, P Alexiou, G Georgakilas, M Maragkakis, ... Nucleic acids research 40 (D1), D222-D229, 2012	657	2012
Functional microRNA targets in protein coding sequences M Reczko, M Maragkakis, P Alexiou, I Grosse, AG Hatzigeorgiou Bioinformatics 28 (6), 771-776, 2012	611	2012
Accurate microRNA target prediction correlates with protein repression levels M Maragkakis, P Alexiou, GL Papadopoulos, M Reczko, T Dalamagas, ... BMC bioinformatics 10, 1-10, 2009	431	2009
Lost in translation: an assessment and perspective for computational microRNA target identification P Alexiou, M Maragkakis, GL Papadopoulos, M Reczko, ... Bioinformatics 25 (23), 3049-3055, 2009	421	2009
DIANA-mirPath: Integrating human and mouse microRNAs in pathways GL Papadopoulos, P Alexiou, M Maragkakis, M Reczko, ... Bioinformatics 25 (15), 1991-1993, 2009	337	2009
Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis A Vourekas, Q Zheng, P Alexiou, M Maragkakis, Y Kirino, BD Gregory, ... Nature structural & molecular biology 19 (8), 773-781, 2012	278	2012
miRGen 2.0: a database of microRNA genomic information and regulation P Alexiou, T Vergoulis, M Gleditzsch, G Prekas, T Dalamagas, M Megraw, ... Nucleic acids research 38 (suppl_1), D137-D141, 2010	188	2010
DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association M Maragkakis, T Vergoulis, P Alexiou, M Reczko, K Plomaritou, M Gousis, ... Nucleic acids research 39 (suppl_2), W145-W148, 2011	179	2011
The RNA helicase MOV10L1 binds piRNA precursors to initiate piRNA processing A Vourekas, K Zheng, Q Fu, M Maragkakis, P Alexiou, J Ma, RS Pillai, ... Genes & development 29 (6), 617-629, 2015	162	2015
FUS regulates genes coding for RNA-binding proteins in neurons by binding to their highly conserved introns T Nakaya, P Alexiou, M Maragkakis, A Chang, Z Mourelatos Rna 19 (4), 498-509, 2013	133	2013
Sequence-dependent but not sequence-specific piRNA adhesion traps mRNAs to the germ plasm A Vourekas, P Alexiou, N Vrettos, M Maragkakis, Z Mourelatos Nature 531 (7594), 390-394, 2016	130	2016
A MicroRNA precursor surveillance system in quality control of MicroRNA synthesis X Liu, Q Zheng, N Vrettos, M Maragkakis, P Alexiou, BD Gregory, ... Molecular cell 55 (6), 868-879, 2014	101	2014
Mitochondrial protein BmPAPI modulates the length of mature piRNAs S Honda, Y Kirino, M Maragkakis, P Alexiou, A Ohtaki, R Murali, ... Rna 19 (10), 1405-1418, 2013	94	2013
The DIANA-mirExTra web server: from gene expression data to microRNA function P Alexiou, M Maragkakis, GL Papadopoulos, VA Simmosis, L Zhang, ... PloS one 5 (2), e9171, 2010	94	2010
Ribothrypsis, a novel process of canonical mRNA decay, mediates ribosome-phased mRNA endonucleolysis F Ibrahim, M Maragkakis, P Alexiou, Z Mourelatos Nature structural & molecular biology 25 (4), 302-310, 2018	67	2018
In Vivo Profiling of Hypoxic Gene Expression in Gliomas Using the Hypoxia Marker EF5 and Laser-capture Microdissection D Marotta, J Karar, WT Jenkins, M Kumanova, KW Jenkins, JW Tobias, ... Cancer research 71 (3), 779-789, 2011	65	2011
Accurate microRNA target prediction using detailed binding site accessibility and machine learning on proteomics data M Reczko, M Maragkakis, P Alexiou, GL Papadopoulos, ... Frontiers in genetics 2, 103, 2012	52	2012
Identification of in vivo, conserved, TAF15 RNA binding sites reveals the impact of TAF15 on the neuronal transcriptome F Ibrahim, M Maragkakis, P Alexiou, MA Maronski, MA Dichter, ... Cell reports 3 (2), 301-308, 2013	46	2013

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