Articles with public access mandates - Daniel R. WoldringLearn more
Available somewhere: 12
A 45-amino-acid scaffold mined from the PDB for high-affinity ligand engineering
MA Kruziki, S Bhatnagar, DR Woldring, VT Duong, BJ Hackel
Chemistry & biology 22 (7), 946-956, 2015
Mandates: US National Institutes of Health
High-throughput ligand discovery reveals a sitewise gradient of diversity in broadly evolved hydrophilic fibronectin domains
DR Woldring, PV Holec, H Zhou, BJ Hackel
PLoS One 10 (9), e0138956, 2015
Mandates: US National Institutes of Health
A gradient of sitewise diversity promotes evolutionary fitness for binder discovery in a three-helix bundle protein scaffold
DR Woldring, PV Holec, LA Stern, Y Du, BJ Hackel
Biochemistry 56 (11), 1656-1671, 2017
Mandates: US National Institutes of Health
Titratable avidity reduction enhances affinity discrimination in mammalian cellular selections of yeast-displayed ligands
LA Stern, CM Csizmar, DR Woldring, CR Wagner, BJ Hackel
ACS combinatorial science 19 (5), 315-323, 2017
Mandates: US National Institutes of Health
Generative models for protein sequence modeling: recent advances and future directions
M Mardikoraem, Z Wang, N Pascual, D Woldring
Briefings in Bioinformatics 24 (6), bbad358, 2023
Mandates: US National Institutes of Health, US Department of Agriculture
64Cu-Labeled Gp2 Domain for PET Imaging of Epidermal Growth Factor Receptor
MA Kruziki, BA Case, JY Chan, EJ Zudock, DR Woldring, D Yee, ...
Molecular pharmaceutics 13 (11), 3747-3755, 2016
Mandates: US National Institutes of Health, Susan G. Komen
Protein fitness prediction is impacted by the interplay of language models, ensemble learning, and sampling methods
M Mardikoraem, D Woldring
Pharmaceutics 15 (5), 1337, 2023
Mandates: US National Institutes of Health, US Department of Agriculture
ScaffoldSeq: Software for characterization of directed evolution populations
DR Woldring, PV Holec, BJ Hackel
Proteins: Structure, Function, and Bioinformatics 84 (7), 869-874, 2016
Mandates: US National Institutes of Health
Topological deep learning based deep mutational scanning
J Chen, DR Woldring, F Huang, X Huang, GW Wei
Computers in biology and medicine 164, 107258, 2023
Mandates: US National Science Foundation, US National Institutes of Health, US …
Proposed three-phenylalanine motif involved in magnetoreception signalling of an Actinopterygii protein expressed in mammalian cells
B Ricker, S Mitra, EA Castellanos, CJ Grady, D Woldring, G Pelled, ...
Open Biology 13 (11), 230019, 2023
Mandates: US National Science Foundation, US National Institutes of Health
EvoSeq-ML: Advancing Data-Centric Machine Learning with Evolutionary-Informed Protein Sequence Representation and Generation
M Mardikoraem, DR Woldring
ICLR 2024 Workshop on Generative and Experimental Perspectives for …, 2024
Mandates: US Department of Agriculture
Single-Cell B-Cell Sequencing to Generate Natively Paired scFab Yeast Surface Display Libraries
N Pascual, T Belecciu, S Schmidt, A Nakisa, X Huang, D Woldring
Genotype Phenotype Coupling: Methods and Protocols, 175-212, 2023
Mandates: US National Institutes of Health
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