| MAFFT multiple sequence alignment software version 7: improvements in performance and usability K Katoh, DM Standley Molecular biology and evolution 30 (4), 772-780, 2013 | 38388 | 2013 |
| MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform K Katoh, K Misawa, K Kuma, T Miyata Nucleic acids research 30 (14), 3059-3066, 2002 | 15980 | 2002 |
| MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization K Katoh, J Rozewicki, KD Yamada Briefings in bioinformatics 20 (4), 1160-1166, 2019 | 7011 | 2019 |
| MAFFT version 5: improvement in accuracy of multiple sequence alignment K Katoh, K Kuma, H Toh, T Miyata Nucleic acids research 33 (2), 511-518, 2005 | 5298 | 2005 |
| Recent developments in the MAFFT multiple sequence alignment program K Katoh, H Toh Briefings in bioinformatics 9 (4), 286-298, 2008 | 3927 | 2008 |
| Multiple alignment of DNA sequences with MAFFT K Katoh, G Asimenos, H Toh Bioinformatics for DNA sequence analysis, 39-64, 2009 | 1589 | 2009 |
| Parallelization of the MAFFT multiple sequence alignment program K Katoh, H Toh Bioinformatics 26 (15), 1899-1900, 2010 | 959 | 2010 |
| Parallelization of MAFFT for large-scale multiple sequence alignments T Nakamura, KD Yamada, K Tomii, K Katoh Bioinformatics 1, 3, 2018 | 810 | 2018 |
| aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity S Kuraku, CM Zmasek, O Nishimura, K Katoh Nucleic acids research 41 (W1), W22-W28, 2013 | 801 | 2013 |
| GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters I Sela, H Ashkenazy, K Katoh, T Pupko Nucleic acids research 43 (W1), W7-W14, 2015 | 794 | 2015 |
| Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework K Katoh, H Toh BMC bioinformatics 9, 1-13, 2008 | 686 | 2008 |
| MAFFT-DASH: integrated protein sequence and structural alignment J Rozewicki, S Li, KM Amada, DM Standley, K Katoh Nucleic acids research 47 (W1), W5-W10, 2019 | 681 | 2019 |
| A simple method to control over-alignment in the MAFFT multiple sequence alignment program K Katoh, DM Standley Bioinformatics 32 (13), 1933-1942, 2016 | 539 | 2016 |
| MAFFT: iterative refinement and additional methods K Katoh, DM Standley Multiple sequence alignment methods, 131-146, 2014 | 494 | 2014 |
| Long-read sequencing identifies GGC repeat expansions in NOTCH2NLC associated with neuronal intranuclear inclusion disease J Sone, S Mitsuhashi, A Fujita, T Mizuguchi, K Hamanaka, K Mori, H Koike, ... Nature genetics 51 (8), 1215-1221, 2019 | 422 | 2019 |
| Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees KD Yamada, K Tomii, K Katoh Bioinformatics 32 (21), 3246-3251, 2016 | 338 | 2016 |
| Adding unaligned sequences into an existing alignment using MAFFT and LAST K Katoh, MC Frith Bioinformatics 28 (23), 3144-3146, 2012 | 260 | 2012 |
| Sister group relationship of turtles to the bird-crocodilian clade revealed by nuclear DNA–coded proteins N Iwabe, Y Hara, Y Kumazawa, K Shibamoto, Y Saito, T Miyata, K Katoh Molecular biology and evolution 22 (4), 810-813, 2005 | 222 | 2005 |
| Improvement in the accuracy of multiple sequence alignment program MAFFT K Katoh, K Kuma, T Miyata, H Toh Genome informatics 16 (1), 22-33, 2005 | 221 | 2005 |
| Monophyly of lampreys and hagfishes supported by nuclear DNA–coded genes S Kuraku, D Hoshiyama, K Katoh, H Suga, T Miyata Journal of molecular evolution 49, 729-735, 1999 | 165 | 1999 |