| Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution LDW Hillier, W Miller, E Birney, W Warren, RC Hardison, CP Ponting, ... Nature 432 (7018), 695-716, 2004 | 2971 | 2004 |
| Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage M Chakraborty*, JG Baldwin-Brown*, AD Long, JJ Emerson Nucleic Acids Research 44 (19), e147-e147, 2016 | 458 | 2016 |
| Extensive gene traffic on the mammalian X chromosome JJ Emerson*, H Kaessmann*, E Betrán, M Long Science 303 (5657), 537-540, 2004 | 452 | 2004 |
| Population Genomics of Sub-Saharan Drosophila melanogaster: African Diversity and Non-African Admixture JE Pool, RB Corbett-Detig, RP Sugino, KA Stevens, CM Cardeno, ... PLoS genetics 8 (12), e1003080, 2012 | 381 | 2012 |
| Comparative sex chromosome genomics in snakes: differentiation, evolutionary strata, and lack of global dosage compensation B Viçoso*, JJ Emerson*, Y Zektser, S Mahajan, D Bachtrog PLoS Biol 11 (8), e1001643, 2013 | 345 | 2013 |
| Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster JJ Emerson*✉, M Cardoso-Moreira*✉, JO Borevitz, M Long Science 320 (5883), 1629-1631, 2008 | 297 | 2008 |
| Natural selection on cis and trans regulation in yeasts JJ Emerson*, LC Hsieh*, HM Sung*, TY Wang*, CJ Huang, HHS Lu, ... Genome Research 20 (6), 826-836, 2010 | 197 | 2010 |
| Models and data on plant-enemy coevolution J Bergelson, G Dwyer, JJ Emerson Annual Review of Genetics 35 (1), 469-499, 2001 | 187 | 2001 |
| Efficient population modification gene-drive rescue system in the malaria mosquito Anopheles stephensi A Adolfi, VM Gantz, N Jasinskiene, HF Lee, K Hwang, G Terradas, ... Nature Communications 11 (1), 1-13, 2020 | 166 | 2020 |
| Structural variants exhibit widespread allelic heterogeneity and shape variation in complex traits M Chakraborty, JJ Emerson, SJ Macdonald, AD Long Nature Communications 10 (1), 1-11, 2019 | 154 | 2019 |
| Hidden genetic variation shapes the structure of functional elements in Drosophila M Chakraborty, NW VanKuren, R Zhao, X Zhang, S Kalsow, JJ Emerson Nature Genetics 50 (1), 20-25, 2018 | 154 | 2018 |
| Inheritance of gene expression level and selective constraints on trans-and cis-regulatory changes in yeast B Schaefke*, JJ Emerson*, TY Wang, MYJ Lu, LC Hsieh, WH Li Molecular Biology and Evolution 30 (9), 2121-2133, 2013 | 102 | 2013 |
| Rapid low-cost assembly of the Drosophila melanogaster reference genome using low-coverage, long-read sequencing EA Solares*, M Chakraborty*, DE Miller, S Kalsow, K Hall, AG Perera, ... G3: Genes, Genomes, Genetics 8 (10), 3143-3154, 2018 | 99 | 2018 |
| Evolution of genome structure in the Drosophila simulans species complex M Chakraborty*, CH Chang*, DE Khost, J Vedanayagam, JR Adrion, ... Genome research 31 (3), 380-396, 2021 | 88 | 2021 |
| Evolutionary genomics of structural variation in Asian rice (Oryza sativa) domestication Y Kou*, Y Liao*, T Toivainen, Y Lv, X Tian, JJ Emerson, BS Gaut, Y Zhou Molecular Biology and Evolution 37 (12), 3507-3524, 2020 | 82 | 2020 |
| The genetic basis of evolutionary change in gene expression levels JJ Emerson, WH Li Philosophical Transactions of the Royal Society B: Biological Sciences 365 …, 2010 | 78 | 2010 |
| Topologically associating domains and their role in the evolution of genome structure and function in Drosophila Y Liao, X Zhang, M Chakraborty, JJ Emerson Genome research 31 (3), 397-410, 2021 | 64 | 2021 |
| Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly M Chakraborty*, A Ramaiah*, A Adolfi, P Halas, B Kaduskar, LT Ngo, ... BMC biology 19 (1), 1-16, 2021 | 51* | 2021 |
| The 3D architecture of the pepper genome and its relationship to function and evolution Y Liao*, J Wang*, Z Zhu, Y Liu, J Chen, Y Zhou, F Liu, J Lei, BS Gaut, ... Nature Communications 13 (1), 3479, 2022 | 49 | 2022 |
| Genetic, genomic, and functional analysis of the granule lattice proteins in Tetrahymena secretory granules AT Cowan*, GR Bowman*, KF Edwards, JJ Emerson, AP Turkewitz Molecular Biology of the Cell 16 (9), 4046-4060, 2005 | 41 | 2005 |
Mahul ChakrabortyTexas A& M UniversityVerified email at tamu.edu