Articles with public access mandates - Henrik BengtssonLearn more
Available somewhere: 19
Integrated genomic analyses of ovarian carcinoma
D Bell, A Berchuck, M Birrer, J Chien, DW Cramer
Nature 474 (7353), 609-615, 2011
Mandates: US National Institutes of Health
Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma
H Noushmehr, DJ Weisenberger, K Diefes, HS Phillips, K Pujara, ...
Cancer cell 17 (5), 510-522, 2010
Mandates: US National Institutes of Health
Subtype and pathway specific responses to anticancer compounds in breast cancer
LM Heiser, A Sadanandam, WL Kuo, SC Benz, TC Goldstein, S Ng, ...
Proceedings of the National Academy of Sciences 109 (8), 2724-2729, 2012
Mandates: US National Institutes of Health, Howard Hughes Medical Institute
DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly
ADGYB Scheinin I, Sie D, Bengtsson H, van de Wiel MA, Olshen AB, van Thuijl ...
Genome Research, 2014
Mandates: US National Institutes of Health, Dutch Cancer Society
Identification of SOX3 as an XX male sex reversal gene in mice and humans
E Sutton, J Hughes, S White, R Sekido, J Tan, V Arboleda, N Rogers, ...
The Journal of clinical investigation 121 (1), 328-341, 2011
Mandates: US National Institutes of Health
Copy number variation in patients with disorders of sex development due to 46, XY gonadal dysgenesis
S White, T Ohnesorg, A Notini, K Roeszler, J Hewitt, H Daggag, C Smith, ...
PLOS ONE 6 (3), e17793, 2011
Mandates: US National Institutes of Health
A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6
H Bengtsson, P Wirapati, TP Speed
Bioinformatics 25 (17), 2149-2156, 2009
Mandates: US National Institutes of Health
Clonal expansion and epigenetic reprogramming following deletion or amplification of mutant IDH1
T Mazor, C Chesnelong, A Pankov, LE Jalbert, C Hong, J Hayes, ...
Proceedings of the National Academy of Sciences 114 (40), 10743-10748, 2017
Mandates: US National Institutes of Health
Parent-specific copy number in paired tumor–normal studies using circular binary segmentation
AB Olshen, H Bengtsson, P Neuvial, PT Spellman, RA Olshen, ...
Bioinformatics 27 (15), 2038-2046, 2011
Mandates: US National Institutes of Health
Cytomegalovirus immediate-early proteins promote stemness properties in glioblastoma
L Soroceanu, L Matlaf, S Khan, A Akhavan, E Singer, V Bezrookove, ...
Cancer research 75 (15), 3065-3076, 2015
Mandates: US National Institutes of Health
illuminaio: An open source IDAT parsing tool for Illumina microarrays
ML Smith, KA Baggerly, H Bengtsson, ME Ritchie, KD Hansen
F1000Research 2, 264, 2013
Mandates: US National Institutes of Health, National Health and Medical Research …
Two distinct routes to oral cancer differing in genome instability and risk for cervical node metastasis
A Bhattacharya, R Roy, AM Snijders, G Hamilton, J Paquette, T Tokuyasu, ...
Clinical Cancer Research 17 (22), 7024-7034, 2011
Mandates: US National Institutes of Health
TumorBoost: Normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays
H Bengtsson, P Neuvial, T Speed
BMC Bioinformatics 11 (1), 245, 2010
Mandates: US National Institutes of Health
A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods
H Bengtsson, A Ray, P Spellman, TP Speed
Bioinformatics 25 (7), 861-867, 2009
Mandates: US National Institutes of Health
Reconstruction of 3D genome architecture via a two-stage algorithm
MR Segal, HL Bengtsson
BMC bioinformatics 16, 1-10, 2015
Mandates: US National Institutes of Health
ACNE: a summarization method to estimate allele-specific copy numbers for Affymetrix SNP arrays
M Ortiz-Estevez, H Bengtsson, A Rubio
Bioinformatics 26 (15), 1827-1833, 2010
Mandates: US National Institutes of Health
Discovering hotspots in functional genomic data superposed on 3D chromatin configuration reconstructions
D Capurso, H Bengtsson, MR Segal
Nucleic Acids Research 44 (5), 2028-2035, 2016
Mandates: US National Science Foundation, US National Institutes of Health
CalMaTe: A method and software to improve allele-specific copy number of SNP arrays for downstream segmentation
M Ortiz-Estevez, A Aramburu, H Bengtsson, P Neuvial, A Rubio
Bioinformatics 28 (13), 1793-1794, 2012
Mandates: US National Institutes of Health
Statistical analysis of Single Nucleotide Polymorphism microarrays in cancer studies
P Neuvial, H Bengtsson, TP Speed
Handbook of Statistical Bioinformatics, 225-255, 2011
Mandates: US National Institutes of Health
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