| Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor SMA Islam, M Díaz-Gay, Y Wu, M Barnes, R Vangara, EN Bergstrom, ... Cell genomics 2 (11), 2022 | 261 | 2022 |
| DNA breathing dynamics in the presence of a terahertz field BS Alexandrov, V Gelev, AR Bishop, A Usheva, KØ Rasmussen Physics Letters A 374 (10), 1214-1217, 2010 | 249 | 2010 |
| Mammalian stem cells reprogramming in response to terahertz radiation J Bock, Y Fukuyo, S Kang, ML Phipps, LB Alexandrov, KØ Rasmussen, ... PloS one 5 (12), e15806, 2010 | 172 | 2010 |
| Nonnegative/binary matrix factorization with a d-wave quantum annealer D O’Malley, VV Vesselinov, BS Alexandrov, LB Alexandrov PloS one 13 (12), e0206653, 2018 | 152 | 2018 |
| Specificity and heterogeneity of terahertz radiation effect on gene expression in mouse mesenchymal stem cells BS Alexandrov, ML Phipps, LB Alexandrov, LG Booshehri, A Erat, ... Scientific reports 3 (1), 1184, 2013 | 130 | 2013 |
| A rare functional noncoding variant at the GWAS-implicated MIR137/MIR2682 locus might confer risk to schizophrenia and bipolar disorder J Duan, J Shi, A Fiorentino, C Leites, X Chen, W Moy, J Chen, ... The American Journal of Human Genetics 95 (6), 744-753, 2014 | 118 | 2014 |
| Non-thermal effects of terahertz radiation on gene expression in mouse stem cells BS Alexandrov, KØ Rasmussen, AR Bishop, A Usheva, LB Alexandrov, ... Biomedical Optics Express 2 (9), 2679-2689, 2011 | 106 | 2011 |
| Unsupervised Phase Mapping of X-ray Diffraction Data by Nonnegative Matrix Factorization Integrated with Custom Clustering ITBSA Valentin Stanev, Velimir V. Vesselinov, A. Gilad Kusne, Graham Antoszewski npj Computational Materials 4 (43), 2018 | 103 | 2018 |
| A nonlinear dynamic model of DNA with a sequence-dependent stacking term BS Alexandrov, V Gelev, Y Monisova, LB Alexandrov, AR Bishop, ... Nucleic Acids Research 37 (7), 2405-2410, 2009 | 93 | 2009 |
| DNA dynamics play a role as a basal transcription factor in the positioning and regulation of gene transcription initiation BS Alexandrov, V Gelev, SW Yoo, LB Alexandrov, Y Fukuyo, AR Bishop, ... Nucleic acids research 38 (6), 1790-1795, 2010 | 91 | 2010 |
| Temperature behavior of NaI (Tl) scintillation detectors KD Ianakiev, BS Alexandrov, PB Littlewood, MC Browne Nuclear Instruments and Methods in Physics Research Section A: Accelerators …, 2009 | 90 | 2009 |
| Contaminant source identification using semi-supervised machine learning VV Vesselinov, BS Alexandrov, D O’Malley Journal of contaminant hydrology 212, 134-142, 2018 | 77 | 2018 |
| Blind source separation for groundwater pressure analysis based on nonnegative matrix factorization BS Alexandrov, VV Vesselinov Water Resources Research 50 (9), 7332-7347, 2014 | 65 | 2014 |
| Bubble statistics and dynamics in double-stranded DNA BS Alexandrov, LT Wille, KØ Rasmussen, AR Bishop, KB Blagoev Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 74 (5 …, 2006 | 63 | 2006 |
| Toward a detailed description of the thermally induced dynamics of the core promoter BS Alexandrov, V Gelev, SW Yoo, AR Bishop, KØ Rasmussen, A Usheva PLoS computational biology 5 (3), e1000313, 2009 | 56 | 2009 |
| DNA breathing dynamics distinguish binding from nonbinding consensus sites for transcription factor YY1 in cells BS Alexandrov, Y Fukuyo, M Lange, N Horikoshi, V Gelev, ... Nucleic acids research 40 (20), 10116-10123, 2012 | 54 | 2012 |
| Unsupervised machine learning based on non-negative tensor factorization for analyzing reactive-mixing VV Vesselinov, MK Mudunuru, S Karra, D O'Malley, BS Alexandrov Journal of Computational Physics 395, 85-104, 2019 | 51 | 2019 |
| Pre-melting dynamics of DNA and its relation to specific functions B Alexandrov, NK Voulgarakis, KØ Rasmussen, A Usheva, AR Bishop Journal of Physics: Condensed Matter 21 (3), 034107, 2008 | 46 | 2008 |
| Ultra-violet light induced changes in DNA dynamics may enhance TT-dimer recognition KB Blagoev, BS Alexandrov, EH Goodwin, AR Bishop DNA repair 5 (7), 863-867, 2006 | 45 | 2006 |
| Feigenbaum cascade of discrete breathers in a model of DNA P Maniadis, BS Alexandrov, AR Bishop, KØ Rasmussen Physical Review E 83 (1), 011904, 2011 | 43 | 2011 |
Kim O. RasmussenTheoretical Division, Los Alamos National LaboratoryVerified email at lanl.gov
