CHARMM: the biomolecular simulation program BR Brooks, CL Brooks III, AD Mackerell Jr, L Nilsson, RJ Petrella, B Roux, ... Journal of computational chemistry 30 (10), 1545-1614, 2009 | 9101 | 2009 |
Bio3d: an R package for the comparative analysis of protein structures BJ Grant, APC Rodrigues, KM ElSawy, JA McCammon, LSD Caves Bioinformatics 22 (21), 2695-2696, 2006 | 1778 | 2006 |
Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin LSD Caves, JD Evanseck, M Karplus Protein Science 7 (3), 649-666, 1998 | 550 | 1998 |
Mutation in myosin heavy chain 6 causes atrial septal defect YH Ching, TK Ghosh, SJ Cross, EA Packham, L Honeyman, S Loughna, ... Nature genetics 37 (4), 423-428, 2005 | 355 | 2005 |
Understanding the mechanism of ice binding by type III antifreeze proteins AA Antson, DJ Smith, DI Roper, S Lewis, LSD Caves, CS Verma, ... Journal of molecular biology 305 (4), 875-889, 2001 | 162 | 2001 |
Locating interaction sites on proteins: the crystal structure of thermolysin soaked in 2% to 100% isopropanol AC English, SH Done, LSD Caves, CR Groom, RE Hubbard Proteins: Structure, Function, and Bioinformatics 37 (4), 628-640, 1999 | 151 | 1999 |
MBO (N) D: A multibody method for long‐time molecular dynamics simulations HM Chun, CE Padilla, DN Chin, M Watanabe, VI Karlov, HE Alper, ... Journal of Computational Chemistry 21 (3), 159-184, 2000 | 120 | 2000 |
Demonstration that 1-trans-epoxysuccinyl-l-leucylamido-(4-guanidino) butane (E-64) is one of the most effective low Mr inhibitors of trypsin-catalysed hydrolysis … SK SREEDHARAN, C VERMA, LSD CAVES, SM BROCKLEHURST, ... Biochemical journal 316 (3), 777-786, 1996 | 75 | 1996 |
Investigating the high affinity and low sequence specificity of calmodulin binding to its targets M Afshar, LSD Caves, L Guimard, RE Hubbard, B Calas, G Grassy, ... Journal of molecular biology 244 (5), 554-571, 1994 | 60 | 1994 |
Conformational change in the activation of lipase: An analysis in terms of low‐frequency normal modes S Jääskeläinen, CS Verma, RE Hubbard, P Lestko, LSD Caves Protein science 7 (6), 1359-1367, 1998 | 57 | 1998 |
Multivariate analysis of conserved sequence–structure relationships in kinesins: coupling of the active site and a tubulin-binding sub-domain BJ Grant, JA McCammon, LSD Caves, RA Cross Journal of molecular biology 368 (5), 1231-1248, 2007 | 56 | 2007 |
X., Yang, W., York BR Brooks III, ADM CLB Jr, L Nilsson, RJ Petrella, B Roux, Y Won, ... IPSJ SIG Technical Report DM and Karplus, M.: CHARMM: the biomolecular …, 2009 | 53 | 2009 |
Inherent flexibility of calmodulin domains: A normal-mode analysis study NP Barton, CS Verma, LSD Caves The Journal of Physical Chemistry B 106 (42), 11036-11040, 2002 | 47 | 2002 |
On the interaction mechanisms of a p53 peptide and nutlin with the MDM2 and MDMX proteins: a Brownian dynamics study K ElSawy, CS Verma, TL Joseph, DP Lane, R Twarock, L Caves Cell Cycle 12 (3), 394-404, 2013 | 43 | 2013 |
Thinking (in) complexity:(In) definitions and (mis) conceptions A Teixeira de Melo, LSD Caves, A Dewitt, E Clutton, R Macpherson, ... Systems Research and Behavioral Science 37 (1), 154-169, 2020 | 39 | 2020 |
Domain motions in dihydrofolate reductase: a molecular dynamics study CS Verma, LSD Caves, RE Hubbard, GCK Roberts Journal of molecular biology 266 (4), 776-796, 1997 | 36 | 1997 |
The impact of viral RNA on the association rates of capsid protein assembly: bacteriophage MS2 as a case study KM ElSawy, LSD Caves, R Twarock Journal of molecular biology 400 (4), 935-947, 2010 | 34 | 2010 |
Controlling complex dynamics with artificial biochemical networks MA Lones, AM Tyrrell, S Stepney, LS Caves Genetic Programming: 13th European Conference, EuroGP 2010, Istanbul, Turkey …, 2010 | 34 | 2010 |
CHARMM: Molecular dynamics simulation package BR Brooks, C Brooks, AD Mackerell, L Nilsson, RJ Petrella, B Roux, ... J. Comput. Chem 30 (10), 1545-1614, 2009 | 33 | 2009 |
The physical determinants of the DNA conformational landscape: an analysis of the potential energy surface of single-strand dinucleotides in the conformational space of duplex DNA KM Elsawy, MK Hodgson, LSD Caves Nucleic acids research 33 (18), 5749-5762, 2005 | 32 | 2005 |