| Modular analysis of the transcriptional regulatory network of< i> E. coli</i> O Resendis-Antonio, JA Freyre-González, R Menchaca-Méndez, ... TRENDS in Genetics 21 (1), 16-20, 2005 | 128 | 2005 |
| Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli RM Gutierrez-Ríos, JA Freyre-Gonzalez, O Resendis, J Collado-Vides, ... BMC microbiology 7 (1), 53, 2007 | 90 | 2007 |
| Functional architecture of Escherichia coli: new insights provided by a natural decomposition approach JA Freyre-González, JA Alonso-Pavón, LG Treviño-Quintanilla, ... Genome biology 9 (10), R154, 2008 | 52 | 2008 |
| Calcitriol increases Dicer expression and modifies the microRNAs signature in SiHa cervical cancer cells RJ González-Duarte, V Cázares-Ordoñez, S Romero-Córdoba, L Díaz, ... Biochemistry and Cell Biology 93 (4), 376-384, 2015 | 41 | 2015 |
| Anti-sigma factors in E. coli: common regulatory mechanisms controlling sigma factors availability L Gerardo Trevino-Quintanilla, J Augusto Freyre-Gonzalez, ... Current genomics 14 (6), 378-387, 2013 | 36 | 2013 |
| Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis JA Freyre-González, AM Manjarrez-Casas, E Merino, M Martinez-Nuñez, ... BMC Systems Biology 7 (1), 127, 2013 | 35 | 2013 |
| Abasy Atlas: a comprehensive inventory of systems, global network properties and systems-level elements across bacteria MA Ibarra-Arellano, AI Campos-González, LG Treviño-Quintanilla, ... Database 2016, baw089, 2016 | 22 | 2016 |
| Prokaryotic regulatory systems biology: Common principles governing the functional architectures of Bacillus subtilis and Escherichia coli unveiled by the natural decomposition … JA Freyre-González, LG Treviño-Quintanilla, IA Valtierra-Gutiérrez, ... Journal of biotechnology 161 (3), 278-286, 2012 | 21 | 2012 |
| Analyzing Regulatory Networks in Bacteria JA Freyre-Gonzalez, LG Trevino-Quintanilla Nature Education 3 (9), 24, 2010 | 21 | 2010 |
| Abasy Atlas v2.2: The most comprehensive and up-to-date inventory of meta-curated, historical, bacterial regulatory networks, their completeness and system-level characterization JM Escorcia-Rodríguez, A Tauch, JA Freyre-González Computational and Structural Biotechnology Journal 18, 1228-1237, 2020 | 20 | 2020 |
| Functional architecture and global properties of the Corynebacterium glutamicum regulatory network: Novel insights from a dataset with a high genomic coverage JA Freyre-Gonzalez, A Tauch Journal of Biotechnology 257, 199-210, 2017 | 17 | 2017 |
| Improving gene regulatory network inference and assessment: The importance of using network structure JM Escorcia-Rodríguez, E Gaytan-Nuñez, EM Hernandez-Benitez, ... Frontiers in Genetics 14, 1143382, 2023 | 12 | 2023 |
| Curation, inference, and assessment of a globally reconstructed gene regulatory network for Streptomyces coelicolor A Zorro-Aranda, JM Escorcia-Rodríguez, JK González-Kise, ... Scientific Reports 12 (1), 2840, 2022 | 11 | 2022 |
| Identification of network topological units coordinating the global expression response to glucose in Bacillus subtilis and its comparison to Escherichia coli CD Vázquez, JA Freyre-González, G Gosset, JA Loza, RM Gutiérrez-Ríos BMC microbiology 9 (1), 176, 2009 | 11 | 2009 |
| Evolutionary constraints on the complexity of genetic regulatory networks allow predictions of the total number of genetic interactions AI Campos, JA Freyre-González Scientific Reports 9 (1), 3618, 2019 | 10 | 2019 |
| Non-synonymous to synonymous substitutions suggest that orthologs tend to keep their functions, while paralogs are a source of functional novelty GMH JM Escorcia-Rodríguez, M Esposito, JA Freyre-Gonzalez PeerJ 10, e13843, 2022 | 7 | 2022 |
| Corynebacterium glutamicum Regulation beyond Transcription: Organizing Principles and Reconstruction of an Extended Regulatory Network Incorporating Regulations Mediated by … JM Escorcia-Rodríguez, A Tauch, JA Freyre-González Microorganisms 9 (7), 1395, 2021 | 7 | 2021 |
| System principles governing the organization, architecture, dynamics, and evolution of gene regulatory networks JA Freyre-González, JM Escorcia-Rodríguez, LF Gutiérrez-Mondragón, ... Frontiers in Bioengineering and Biotechnology 10, 888732, 2022 | 5 | 2022 |
| Molecular characterization of chloranilic acid degradation in Pseudomonas putida TQ07 LG Treviño-Quintanilla, JA Freyre-González, RA Guillén-Garcés, C Olvera The Journal of Microbiology 49 (6), 974-980, 2011 | 4 | 2011 |
| Rhizobium etli CFN42 proteomes showed isoenzymes in free-living and symbiosis with a different transcriptional regulation inferred from a transcriptional regulatory network H Taboada-Castro, J Gil, L Gómez-Caudillo, JM Escorcia-Rodríguez, ... Frontiers in Microbiology 13, 947678, 2022 | 3 | 2022 |
Rosa-Maria Gutierrez-RiosInvestigador IBT UNAMVerified email at ibt.unam.mx