| GENIA corpus—a semantically annotated corpus for bio-textmining JD Kim, T Ohta, Y Tateisi, J Tsujii Bioinformatics 19 (suppl_1), i180-i182, 2003 | 1587 | 2003 |
| Introduction to the bio-entity recognition task at JNLPBA N Collier, T Ohta, Y Tsuruoka, Y Tateisi, JD Kim Proceedings of the International Joint Workshop on Natural Language …, 2004 | 840 | 2004 |
| Overview of BioNLP’09 shared task on event extraction JD Kim, T Ohta, S Pyysalo, Y Kano, J Tsujii Proceedings of the BioNLP 2009 workshop companion volume for shared task, 1-9, 2009 | 825 | 2009 |
| Developing a robust part-of-speech tagger for biomedical text Y Tsuruoka, Y Tateishi, JD Kim, T Ohta, J McNaught, S Ananiadou, ... Advances in Informatics: 10th Panhellenic Conference on Informatics, PCI …, 2005 | 621 | 2005 |
| Corpus annotation for mining biomedical events from literature JD Kim, T Ohta, J Tsujii BMC bioinformatics 9, 1-25, 2008 | 495 | 2008 |
| The GENIA corpus: An annotated research abstract corpus in molecular biology domain T Ohta, Y Tateisi, JD Kim, H Mima, J Tsujii Proceedings of the human language technology conference, 73-77, 2002 | 432 | 2002 |
| Overview of BioNLP shared task 2013 C Nédellec, R Bossy, JD Kim, JJ Kim, T Ohta, S Pyysalo, P Zweigenbaum Proceedings of the BioNLP shared task 2013 workshop, 1-7, 2013 | 294 | 2013 |
| Event extraction with complex event classification using rich features M Miwa, R Sætre, JD Kim, J Tsujii Journal of bioinformatics and computational biology 8 (01), 131-146, 2010 | 229 | 2010 |
| Extraction of gene-disease relations from Medline using domain dictionaries and machine learning HW Chun, Y Tsuruoka, JD Kim, R Shiba, N Nagata, T Hishiki, J Tsujii Biocomputing 2006, 4-15, 2006 | 224 | 2006 |
| Overview of genia event task in bionlp shared task 2011 JD Kim, Y Wang, T Takagi, A Yonezawa Proceedings of BioNLP shared task 2011 workshop, 7-15, 2011 | 190 | 2011 |
| The genia event extraction shared task, 2013 edition-overview JD Kim, Y Wang, Y Yasunori Proceedings of the BioNLP Shared Task 2013 Workshop, 8-15, 2013 | 172 | 2013 |
| The genia event and protein coreference tasks of the BioNLP shared task 2011 JD Kim, N Nguyen, Y Wang, J Tsujii, T Takagi, A Yonezawa BMC bioinformatics 13, 1-12, 2012 | 113 | 2012 |
| New challenges for text mining: mapping between text and manually curated pathways K Oda, JD Kim, T Ohta, D Okanohara, T Matsuzaki, Y Tateisi, J Tsujii BMC bioinformatics 9, 1-14, 2008 | 81 | 2008 |
| EXTRACTING BIO‐MOLECULAR EVENTS FROM LITERATURE—THE BIONLP’09 SHARED TASK JD Kim, T Ohta, S Pyysalo, Y Kano, J Tsujii Computational Intelligence 27 (4), 513-540, 2011 | 70 | 2011 |
| BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ... Journal of biomedical semantics 5, 1-13, 2014 | 69 | 2014 |
| PubAnnotation-a persistent and sharable corpus and annotation repository JD Kim, Y Wang BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language …, 2012 | 65 | 2012 |
| BioNLP shared task 2011: Supporting resources P Stenetorp, G Topić, S Pyysalo, T Ohta, JD Kim, J Tsujii Proceedings of BioNLP shared task 2011 workshop, 112-120, 2011 | 57 | 2011 |
| Introducing glycomics data into the Semantic Web KF Aoki-Kinoshita, J Bolleman, MP Campbell, S Kawano, JD Kim, ... Journal of Biomedical Semantics 4, 1-7, 2013 | 54 | 2013 |
| An intelligent search engine and GUI-based efficient MEDLINE search tool based on deep syntactic parsing T Ohta, Y Miyao, T Ninomiya, Y Tsuruoka, A Yakushiji, K Masuda, ... Proceedings of the COLING/ACL 2006 Interactive Presentation Sessions, 17-20, 2006 | 50 | 2006 |
| Natural language query processing for SPARQL generation: A prototype system for SNOMED CT JD Kim, KB Cohen Proceedings of biolink 32, 38, 2013 | 49 | 2013 |
