| High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries C Jain, LM Rodriguez-R, AM Phillippy, KT Konstantinidis, S Aluru Nature communications 9 (1), 5114, 2018 | 3936 | 2018 |
| The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes LM Rodriguez-R, KT Konstantinidis PeerJ Preprints, 2016 | 1311 | 2016 |
| Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics R Poretsky, LM Rodriguez-R, C Luo, D Tsementzi, KT Konstantinidis PloS one 9 (4), e93827, 2014 | 810 | 2014 |
| Bypassing Cultivation To Identify Bacterial Species LM Rodriguez-R, KT Konstantinidis Microbe 9 (3), 111-118, 2014 | 771 | 2014 |
| MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences C Luo, LM Rodriguez-r, KT Konstantinidis Nucleic acids research 42 (8), e73-e73, 2014 | 521 | 2014 |
| The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level LM Rodriguez-R, S Gunturu, WT Harvey, R Rosselló-Mora, JM Tiedje, ... Nucleic acids research 46 (W1), W282-W288, 2018 | 505 | 2018 |
| Microbiome of the upper troposphere: species composition and prevalence, effects of tropical storms, and atmospheric implications N DeLeon-Rodriguez, TL Lathem, LM Rodriguez-R, JM Barazesh, ... Proceedings of the National Academy of Sciences 110 (7), 2575-2580, 2013 | 497 | 2013 |
| Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets LM Rodriguez-R, KT Konstantinidis Bioinformatics 30 (5), 629-635, 2013 | 231 | 2013 |
| New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters S Campanaro, L Treu, LM Rodriguez-R, A Kovalovszki, RM Ziels, I Maus, ... Biotechnology for biofuels 13, 1-18, 2020 | 221* | 2020 |
| Nonpareil 3: fast estimation of metagenomic coverage and sequence diversity LM Rodriguez-R, S Gunturu, JM Tiedje, JR Cole, KT Konstantinidis MSystems 3 (3), 10.1128/msystems. 00039-18, 2018 | 191 | 2018 |
| Detecting nitrous oxide reductase (nosZ) genes in soil metagenomes: method development and implications for the nitrogen cycle LH Orellana, LM Rodriguez-R, S Higgins, JC Chee-Sanford, RA Sanford, ... mBio 10 (5), 01193-14, 2014 | 190* | 2014 |
| Estimating coverage in metagenomic data sets and why it matters LM Rodriguez-r, KT Konstantinidis The ISME journal 8 (11), 2349-2351, 2014 | 186 | 2014 |
| Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill LM Rodriguez-r, WA Overholt, C Hagan, M Huettel, JE Kostka, ... The ISME journal 9 (9), 1928-1940, 2015 | 179 | 2015 |
| Soil microbial community responses to a decade of warming as revealed by comparative metagenomics C Luo, LM Rodriguez-R, ER Johnston, L Wu, L Cheng, K Xue, Q Tu, ... Applied and environmental microbiology 80 (5), 1777-1786, 2014 | 175 | 2014 |
| Shifts in bacterial communities of two caribbean reef-building coral species affected by white plague disease. A Cárdenas, LM Rodriguez-R, V Pizarro, LF Cadavid, C Arévalo-Ferro The ISME journal, 2011 | 172 | 2011 |
| SAR11 bacteria linked to ocean anoxia and nitrogen loss D Tsementzi, J Wu, S Deutsch, S Nath, LM Rodriguez-R, AS Burns, ... Nature 536 (7615), 179-183, 2016 | 170 | 2016 |
| SeqCode: a nomenclatural code for prokaryotes described from sequence data BP Hedlund, M Chuvochina, P Hugenholtz, KT Konstantinidis, AE Murray, ... Nature Microbiology 7 (10), 1702-1708, 2022 | 157 | 2022 |
| The reliability of metagenome-assembled genomes (MAGs) in representing natural populations: insights from comparing MAGs against isolate genomes derived from the same fecal sample A Meziti, LM Rodriguez-R, JK Hatt, A Peña-Gonzalez, K Levy, ... Applied and environmental microbiology 87 (6), e02593-20, 2021 | 148 | 2021 |
| Genomes-based phylogeny of the genus Xanthomonas LM Rodriguez-R, A Grajales, ML Arrieta-Ortiz, C Salazar, S Restrepo, ... BMC microbiology 12, 1-14, 2012 | 107 | 2012 |
| An improved method for TAL effectors DNA-binding sites prediction reveals functional convergence in TAL repertoires of Xanthomonas oryzae strains AL Pérez-Quintero, LM Rodriguez-R, A Dereeper, C López, R Koebnik, ... PloS one 8 (7), e68464, 2013 | 105 | 2013 |
Kostas KonstantinidisGeorgia TechVerified email at ce.gatech.edu