| Yersinia pestis and the Plague of Justinian 541–543 AD: a genomic analysis DM Wagner, J Klunk, M Harbeck, A Devault, N Waglechner, JW Sahl, ... The Lancet Infectious Diseases 14 (4), 319-326, 2014 | 590 | 2014 |
| Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus KI Bos, A Herbig, J Sahl, N Waglechner, M Fourment, SA Forrest, J Klunk, ... Elife 5, e12994, 2016 | 208 | 2016 |
| Evolution of immune genes is associated with the Black Death J Klunk, TP Vilgalys, CE Demeure, X Cheng, M Shiratori, J Madej, R Beau, ... Nature 611 (7935), 312-319, 2022 | 167 | 2022 |
| Plasmodium falciparum malaria in 1st–2nd century CE southern Italy S Marciniak, TL Prowse, DA Herring, J Klunk, M Kuch, AT Duggan, ... Current Biology 26 (23), R1220-R1222, 2016 | 120 | 2016 |
| The paradox of HBV evolution as revealed from a 16th century mummy ZP Ross, J Klunk, G Fornaciari, V Giuffra, S Duchêne, AT Duggan, ... PLoS pathogens 14 (1), e1006750, 2018 | 108* | 2018 |
| Capturing the resistome: a targeted capture method to reveal antibiotic resistance determinants in metagenomes AK Guitor, AR Raphenya, J Klunk, M Kuch, B Alcock, MG Surette, ... Antimicrobial agents and chemotherapy 64 (1), 10.1128/aac. 01324-19, 2019 | 86 | 2019 |
| Optimizing extraction and targeted capture of ancient environmental DNA for reconstructing past environments using the PalaeoChip Arctic-1.0 bait-set TJ Murchie, M Kuch, AT Duggan, ML Ledger, K Roche, J Klunk, ... Quaternary Research 99, 305-328, 2021 | 76 | 2021 |
| Ancient human genomics: the methodology behind reconstructing evolutionary pathways S Marciniak, J Klunk, A Devault, J Enk, HN Poinar Journal of human evolution 79, 21-34, 2015 | 35 | 2015 |
| A Black Death mass grave at Thornton Abbey: the discovery and examination of a fourteenth-century rural catastrophe H Willmott, P Townend, DM Swales, H Poinar, K Eaton, J Klunk Antiquity 94 (373), 179-196, 2020 | 34 | 2020 |
| Ancient Roman mitochondrial genomes and isotopes reveal relationships and geographic origins at the local and pan-Mediterranean scales MV Emery, AT Duggan, TJ Murchie, RJ Stark, J Klunk, J Hider, K Eaton, ... Journal of Archaeological Science: Reports 20, 200-209, 2018 | 33 | 2018 |
| The origins and genomic diversity of American Civil War Era smallpox vaccine strains AT Duggan, J Klunk, AF Porter, AN Dhody, R Hicks, GL Smith, ... Genome biology 21, 1-11, 2020 | 28 | 2020 |
| Surveying the repair of ancient DNA from bones via high-throughput sequencing N Mouttham, J Klunk, M Kuch, R Fourney, H Poinar BioTechniques 59 (1), 19, 2015 | 27 | 2015 |
| Genetic resiliency and the Black Death: No apparent loss of mitogenomic diversity due to the Black Death in medieval London and Denmark J Klunk, AT Duggan, R Redfern, J Gamble, JL Boldsen, GB Golding, ... American journal of physical anthropology 169 (2), 240-252, 2019 | 25 | 2019 |
| American mastodon mitochondrial genomes suggest multiple dispersal events in response to Pleistocene climate oscillations E Karpinski, D Hackenberger, G Zazula, C Widga, AT Duggan, ... Nature Communications 11 (1), 1-9, 2020 | 16 | 2020 |
| Genetic causes and consequences of ancient plague pandemics: pathogen evolution and human demographic reverberations J Klunk | 11 | 2018 |
| Examining pathogen DNA recovery across the remains of a 14th century Italian friar (Blessed Sante) infected with Brucella melitensis J Hider, AT Duggan, J Klunk, K Eaton, GS Long, E Karpinski, V Giuffra, ... International Journal of Paleopathology 39, 20-34, 2022 | 7 | 2022 |
| DNA methylation-based profiling of horse archaeological remains for age-at-death and castration X Liu, A Seguin-Orlando, L Chauvey, G Tressières, S Schiavinato, ... Iscience 26 (3), 2023 | 6 | 2023 |
| A 14th century CE Brucella melitensis genome and the recent expansion of the Western Mediterranean clade GS Long, J Hider, AT Duggan, J Klunk, K Eaton, E Karpinski, V Giuffra, ... PLoS pathogens 19 (7), e1011538, 2023 | 4 | 2023 |
| A 16th century Escherichia coli draft genome associated with an opportunistic bile infection GS Long, J Klunk, AT Duggan, M Tapson, V Giuffra, L Gazzè, A Fornaciari, ... Communications biology 5 (1), 1-10, 2022 | 3 | 2022 |
| Improving the extraction of ancient Yersinia pestis genomes from the dental pulp P Clavel, L Louis, C Der Sarkissian, C Thèves, C Gillet, L Chauvey, ... Iscience 26 (5), 2023 | 2 | 2023 |