| EcoCyc: fusing model organism databases with systems biology IM Keseler, A Mackie, M Peralta-Gil, A Santos-Zavaleta, S Gama-Castro, ... Nucleic acids research 41 (D1), D605-D612, 2013 | 730 | 2013 |
| The EcoCyc database: reflecting new knowledge about Escherichia coli K-12 IM Keseler, A Mackie, A Santos-Zavaleta, R Billington, ... Nucleic acids research 45 (D1), D543-D550, 2017 | 674 | 2017 |
| EcoCyc: a comprehensive database of Escherichia coli biology IM Keseler, J Collado-Vides, A Santos-Zavaleta, M Peralta-Gil, ... Nucleic acids research 39 (suppl_1), D583-D590, 2010 | 646 | 2010 |
| RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation S Gama-Castro, V Jiménez-Jacinto, M Peralta-Gil, A Santos-Zavaleta, ... Nucleic acids research 36 (suppl_1), D120-D124, 2008 | 630 | 2008 |
| RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond S Gama-Castro, H Salgado, A Santos-Zavaleta, D Ledezma-Tejeida, ... Nucleic acids research 44 (D1), D133-D143, 2016 | 552 | 2016 |
| RegulonDB v8. 0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more H Salgado, M Peralta-Gil, S Gama-Castro, A Santos-Zavaleta, ... Nucleic acids research 41 (D1), D203-D213, 2013 | 517 | 2013 |
| RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ... Nucleic acids research 39 (suppl_1), D98-D105, 2010 | 469 | 2010 |
| RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12 A Santos-Zavaleta, H Salgado, S Gama-Castro, M Sánchez-Pérez, ... Nucleic acids research 47 (D1), D212-D220, 2019 | 384 | 2019 |
| The EcoCyc database in 2021 IM Keseler, S Gama-Castro, A Mackie, R Billington, C Bonavides-Martínez, ... Frontiers in microbiology 12, 711077, 2021 | 200 | 2021 |
| The ecocyc database PD Karp, WK Ong, S Paley, R Billington, R Caspi, C Fulcher, A Kothari, ... EcoSal Plus 8 (1), 10.1128/ecosalplus. ESP-0006-2018, 2018 | 186 | 2018 |
| RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12 VH Tierrafría, C Rioualen, H Salgado, P Lara, S Gama-Castro, P Lally, ... Microbial Genomics 8 (5), 000833, 2022 | 86 | 2022 |
| Bioinformatics resources for the study of gene regulation in bacteria J Collado-Vides, H Salgado, E Morett, S Gama-Castro, V Jiménez-Jacinto, ... Journal of bacteriology 191 (1), 23-31, 2009 | 40 | 2009 |
| RegulonDB version 7.0: transcriptional regulation of S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ... Escherichia coli, 98-105, 0 | 38 | |
| The ecocyc database (2023) PD Karp, S Paley, R Caspi, A Kothari, M Krummenacker, PE Midford, ... EcoSal Plus 11 (1), eesp-0002-2023, 2023 | 25 | 2023 |
| RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12 H Salgado, S Gama-Castro, P Lara, C Mejia-Almonte, ... Nucleic Acids Research 52 (D1), D255-D264, 2024 | 24 | 2024 |
| Extracting Regulatory Networks of Escherichia coli from RegulonDB H Salgado, I Martínez-Flores, A López-Fuentes, JS García-Sotelo, ... Bacterial Molecular Networks: Methods and Protocols, 179-195, 2012 | 18 | 2012 |
| Strategies towards digital and semi-automated curation in RegulonDB F Rinaldi, O Lithgow, S Gama-Castro, H Solano, A López-Fuentes, ... Database 2017, bax012, 2017 | 14 | 2017 |
| RegulonDB 11.0: comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12. Microb Genom 8: mgen000833 VH Tierrafría, C Rioualen, H Salgado, P Lara, S Gama-Castro, P Lally, ... | 10 | 2022 |
| First steps in automatic summarization of transcription factor properties for RegulonDB: classification of sentences about structural domains and regulated processes CF Méndez-Cruz, S Gama-Castro, C Mejía-Almonte, MP Castillo-Villalba, ... Database 2017, bax070, 2017 | 10 | 2017 |
| Sensory Systems and Transcriptional Regulation in Escherichia coli G Femerling, S Gama-Castro, P Lara, D Ledezma-Tejeida, VH Tierrafría, ... Frontiers in Bioengineering and Biotechnology 10, 823240, 2022 | 5 | 2022 |