| Evolving knowledge graph similarity for supervised learning in complex biomedical domains RT Sousa, S Silva, C Pesquita BMC bioinformatics 21, 1-19, 2020 | 51 | 2020 |
| A collection of benchmark data sets for knowledge graph-based similarity in the biomedical domain C Cardoso, RT Sousa, S Köhler, C Pesquita Database 2020, baaa078, 2020 | 17 | 2020 |
| Supervised biomedical semantic similarity RT Sousa, S Silva, C Pesquita IEEE Access 11, 60635-60645, 2023 | 11 | 2023 |
| Multi-domain knowledge graph embeddings for gene-disease association prediction S Nunes, RT Sousa, C Pesquita Journal of Biomedical Semantics 14 (1), 11, 2023 | 9 | 2023 |
| evoKGsim+: a framework for tailoring knowledge graph-based similarity for supervised learning RT Sousa, S Silva, C Pesquita The Semantic Web: ESWC 2021 Satellite Events: Virtual Event, June 6–10, 2021 …, 2021 | 5 | 2021 |
| Explaining protein–protein interactions with knowledge graph-based semantic similarity RT Sousa, S Silva, C Pesquita Computers in Biology and Medicine 170, 108076, 2024 | 4 | 2024 |
| The supervised semantic similarity toolkit RT Sousa, S Silva, C Pesquita European Semantic Web Conference, 42-46, 2022 | 4 | 2022 |
| Explaining Artificial Intelligence Predictions of Disease Progression with Semantic Similarity. S Nunes, RT Sousa, F Serrano, R Branco, DF Soares, AS Martins, ... CLEF (Working Notes), 1256-1268, 2022 | 4 | 2022 |
| Explainable Representations for Relation Prediction in Knowledge Graphs RT Sousa, S Silva, C Pesquita Proceedings of the 20th International Conference on Principles of Knowledge …, 2023 | 3 | 2023 |
| Hierarchical Modelling for ALS Prognosis: Predicting the Progression Towards Critical Events. R Branco, DF Soares, AS Martins, E Auletta, EN Castanho, S Nunes, ... CLEF (Working Notes), 1211-1227, 2022 | 3 | 2022 |
| Biomedical knowledge graph embeddings with negative statements RT Sousa, S Silva, H Paulheim, C Pesquita International Semantic Web Conference, 428-446, 2023 | 1 | 2023 |
| A Prompt Engineering Approach and a Knowledge Graph based Framework for Tackling Legal Implications of Large Language Model Answers G Hannah, RT Sousa, I Dasoulas, C d'Amato arXiv preprint arXiv:2410.15064, 2024 | | 2024 |
| Integrating Heterogeneous Gene Expression Data through Knowledge Graphs for Improving Diabetes Prediction RT Sousa, H Paulheim arXiv preprint arXiv:2404.14970, 2024 | | 2024 |
| Injecting domain knowledge into graph neural networks for protein-protein interactions L Balbi, R Sousa, P Cotovio, C Pesquita | | 2024 |
| Benchmark datasets for biomedical knowledge graphs with negative statements RT Sousa, S Silva, C Pesquita arXiv preprint arXiv:2307.11719, 2023 | | 2023 |
| Towards Supervised Biomedical Semantic Similarity. RT Sousa, S Silva, C Pesquita SeWeBMeDA@ ESWC, 2022 | | 2022 |
| Is there data leakage in protein-protein interaction prediction using knowledge graphs? RT Sousa, S Silva, C Pesquita ISWC (Posters/Demos/Industry), 2021 | | 2021 |
| Evolving Meaning for Supervised Learning in Complex Biomedical Domains Using Knowledge Graphs RT Sousa The Semantic Web: ESWC 2020 Satellite Events: ESWC 2020 Satellite Events …, 2020 | | 2020 |
| Evolving meaning: Using genetic Programming to learn similarity perspectives for mining biomedical data RIT de Sousa PQDT-Global, 2019 | | 2019 |
| Explaining Protein-Protein Interaction Predictions with Genetic Programming RT Sousa, S Silva, C Pesquita Evo* 2022, 30, 0 | | |