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| A high-resolution map of human evolutionary constraint using 29 mammals K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ... Nature 478 (7370), 476-482, 2011 | 1292 | 2011 |
| Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ... Science 330 (6012), 1787-1797, 2010 | 1097 | 2010 |
| Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo S Rouskin, M Zubradt, S Washietl, M Kellis, JS Weissman Nature 505 (7485), 701-705, 2014 | 901 | 2014 |
| Fast and reliable prediction of noncoding RNAs S Washietl, IL Hofacker, PF Stadler Proceedings of the National Academy of Sciences 102 (7), 2454-2459, 2005 | 867 | 2005 |
| Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome S Washietl, IL Hofacker, M Lukasser, A Hüttenhofer, PF Stadler Nature biotechnology 23 (11), 1383-1390, 2005 | 479 | 2005 |
| Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals S Washietl, M Kellis, M Garber Genome research 24 (4), 616-628, 2014 | 422 | 2014 |
| A benchmark of multiple sequence alignment programs upon structural RNAs PP Gardner, A Wilm, S Washietl Nucleic acids research 33 (8), 2433-2439, 2005 | 368 | 2005 |
| Oviduct: roles in fertilization and early embryo development S Li, W Winuthayanon J Endocrinol 232 (1), R1-R26, 2017 | 362* | 2017 |
| RNAz 2.0: improved noncoding RNA detection AR Gruber, S Findeiß, S Washietl, IL Hofacker, PF Stadler Biocomputing 2010, 69-79, 2010 | 335 | 2010 |
| miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes PWC Hsu, HD Huang, SD Hsu, LZ Lin, AP Tsou, CP Tseng, PF Stadler, ... Nucleic acids research 34 (suppl_1), D135-D139, 2006 | 260 | 2006 |
| Structured RNAs in the ENCODE selected regions of the human genome S Washietl, JS Pedersen, JO Korbel, C Stocsits, AR Gruber, ... Genome research 17 (6), 852-864, 2007 | 226 | 2007 |
| RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data S Washietl, S Findeiß, SA Müller, S Kalkhof, M Von Bergen, IL Hofacker, ... Rna 17 (4), 578-594, 2011 | 225 | 2011 |
| Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics S Washietl, IL Hofacker Journal of molecular biology 342 (1), 19-30, 2004 | 200 | 2004 |
| Protein prenyltransferases S Maurer-Stroh, S Washietl, F Eisenhaber Genome biology 4, 1-9, 2003 | 189 | 2003 |
| RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction S Washietl, IL Hofacker, PF Stadler, M Kellis Nucleic acids research 40 (10), 4261-4272, 2012 | 135 | 2012 |
| New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes BJ Parker, I Moltke, A Roth, S Washietl, J Wen, M Kellis, R Breaker, ... Genome research 21 (11), 1929-1943, 2011 | 131 | 2011 |
| The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures AR Gruber, R Neuböck, IL Hofacker, S Washietl Nucleic acids research 35 (suppl_2), W335-W338, 2007 | 117 | 2007 |
| Strategies for measuring evolutionary conservation of RNA secondary structures AR Gruber, SH Bernhart, IL Hofacker, S Washietl BMC bioinformatics 9, 1-19, 2008 | 104 | 2008 |
| Evolutionary patterns of non-coding RNAs AF Bompfünewerer, C Flamm, C Fried, G Fritzsch, IL Hofacker, ... Theory in Biosciences 123 (4), 301-369, 2005 | 97 | 2005 |
