| Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED S Kovaka, Y Fan, B Ni, W Timp, MC Schatz Nature biotechnology 39 (4), 431-441, 2021 | 240 | 2021 |
| Nanopore sequencing detects structural variants in cancer AL Norris, RE Workman, Y Fan, JR Eshleman, W Timp Cancer biology & therapy 17 (3), 246-253, 2016 | 182 | 2016 |
| Applying rapid whole-genome sequencing to predict phenotypic antimicrobial susceptibility testing results among carbapenem-resistant Klebsiella pneumoniae clinical isolates PD Tamma, Y Fan, Y Bergman, G Pertea, AQ Kazmi, S Lewis, KC Carroll, ... Antimicrobial agents and chemotherapy 63 (1), e01923-18, 2019 | 79 | 2019 |
| Transmission and clearance of potential procarcinogenic bacteria during fecal microbiota transplantation for recurrent Clostridioides difficile JL Drewes, A Corona, U Sanchez, Y Fan, SK Hourigan, M Weidner, ... JCI insight 4 (19), 2019 | 50 | 2019 |
| Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore–Washington metropolitan area PM Thielen, S Wohl, T Mehoke, S Ramakrishnan, M Kirsche, ... JCI insight 6 (6), 2021 | 47* | 2021 |
| Successful treatment of persistent Burkholderia cepacia complex bacteremia with ceftazidime-avibactam PD Tamma, Y Fan, Y Bergman, AC Sick-Samuels, AJ Hsu, W Timp, ... Antimicrobial agents and chemotherapy 62 (4), 10.1128/aac. 02213-17, 2018 | 45 | 2018 |
| A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor J Vornhagen, CM Bassis, S Ramakrishnan, R Hein, S Mason, Y Bergman, ... PLoS pathogens 17 (4), e1009537, 2021 | 34 | 2021 |
| De novo genome assembly of the tobacco hornworm moth (Manduca sexta) A Gershman, TG Romer, Y Fan, R Razaghi, WA Smith, W Timp G3 11 (1), jkaa047, 2021 | 30 | 2021 |
| First Draft Genome Sequence of the Pathogenic Fungus Lomentospora prolificans (Formerly Scedosporium prolificans) R Luo, A Zimin, R Workman, Y Fan, G Pertea, N Grossman, MP Wear, ... G3: Genes, Genomes, Genetics 7 (11), 3831-3836, 2017 | 16 | 2017 |
| Multiplexed analysis of fixed tissue RNA using Ligation in situ Hybridization JJ Credle, CY Itoh, T Yuan, R Sharma, ER Scott, RE Workman, Y Fan, ... Nucleic acids research 45 (14), e128-e128, 2017 | 16 | 2017 |
| Similar evolutionary trajectories in an environmental Cryptococcus neoformans isolate after human and murine infection P Sephton-Clark, SA McConnell, N Grossman, RP Baker, Q Dragotakes, ... Proceedings of the National Academy of Sciences 120 (2), e2217111120, 2023 | 12* | 2023 |
| Network analysis of protein adaptation: modeling the functional impact of multiple mutations V Beleva Guthrie, DL Masica, A Fraser, J Federico, Y Fan, M Camps, ... Molecular biology and evolution 35 (6), 1507-1519, 2018 | 12 | 2018 |
| Comprehensive screening of a light-inducible split Cre recombinase with domain insertion profiling N Tague, V Andreani, Y Fan, W Timp, MJ Dunlop ACS Synthetic Biology 12 (10), 2834-2842, 2023 | 4 | 2023 |
| Genome and transcriptome of a pathogenic yeast, Candida nivariensis Y Fan, AN Gale, A Bailey, K Barnes, K Colotti, M Mass, LB Morina, ... G3 11 (7), jkab137, 2021 | 3 | 2021 |
| Multicentre genetic diversity study of carbapenem-resistant Enterobacterales: predominance of untypeable pUVA-like blaKPC bearing plasmids PJ Simner, Y Bergman, Y Fan, EB Jacobs, S Ramakrishnan, J Lu, S Lewis, ... JAC-Antimicrobial Resistance 5 (3), dlad061, 2023 | 1 | 2023 |
| Treatment of Sindbis virus-infected neurons with antibody to E2 alters synthesis of complete and nsP1-expressing defective viral RNAs JX Yeh, Y Fan, ML Bartlett, X Zhang, N Sadowski, DA Hauer, W Timp, ... Mbio 13 (5), e02221-22, 2022 | 1 | 2022 |
Winston TimpAssociate Professor, Johns Hopkins UniversityVerified email at jhu.edu