| Cytoscape: a software environment for integrated models of biomolecular interaction networks P Shannon, A Markiel, O Ozier, NS Baliga, JT Wang, D Ramage, N Amin, ... Genome research 13 (11), 2498-2504, 2003 | 44305 | 2003 |
| Cytoscape 2.8: new features for data integration and network visualization ME Smoot, K Ono, J Ruscheinski, PL Wang, T Ideker Bioinformatics 27 (3), 431-432, 2011 | 5141 | 2011 |
| A SARS-CoV-2 protein interaction map reveals targets for drug repurposing DE Gordon, GM Jang, M Bouhaddou, J Xu, K Obernier, KM White, ... Nature 583 (7816), 459-468, 2020 | 4657 | 2020 |
| Genome-wide methylation profiles reveal quantitative views of human aging rates G Hannum, J Guinney, L Zhao, LI Zhang, G Hughes, SV Sadda, B Klotzle, ... Molecular cell 49 (2), 359-367, 2013 | 3531 | 2013 |
| Integration of biological networks and gene expression data using Cytoscape MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ... Nature protocols 2 (10), 2366-2382, 2007 | 2781 | 2007 |
| Integrated genomic characterization of papillary thyroid carcinoma N Agrawal, R Akbani, BA Aksoy, A Ally, H Arachchi, SL Asa, JT Auman, ... Cell 159 (3), 676-690, 2014 | 2676 | 2014 |
| Integrated genomic and proteomic analyses of a systematically perturbed metabolic network T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, ... Science 292 (5518), 929-934, 2001 | 2654 | 2001 |
| A NEW APPROACH TO DECODING LIFE: Systems Biology T Ideker, T Galitski, L Hood Annual review of genomics and human genetics 2 (1), 343-372, 2001 | 2388 | 2001 |
| Network‐based classification of breast cancer metastasis HY Chuang, E Lee, YT Liu, D Lee, T Ideker Molecular systems biology 3 (1), 140, 2007 | 1798 | 2007 |
| A travel guide to Cytoscape plugins R Saito, ME Smoot, K Ono, J Ruscheinski, PL Wang, S Lotia, AR Pico, ... Nature methods 9 (11), 1069-1076, 2012 | 1539 | 2012 |
| Discovering regulatory and signalling circuits in molecular interaction networks T Ideker, O Ozier, B Schwikowski, AF Siegel Bioinformatics 18 (suppl_1), S233-S240, 2002 | 1479 | 2002 |
| Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication R König, Y Zhou, D Elleder, TL Diamond, GMC Bonamy, JT Irelan, ... Cell 135 (1), 49-60, 2008 | 1195 | 2008 |
| Protein networks in disease T Ideker, R Sharan Genome research 18 (4), 644-652, 2008 | 1004 | 2008 |
| Human host factors required for influenza virus replication R König, S Stertz, Y Zhou, A Inoue, HH Hoffmann, S Bhattacharyya, ... Nature 463 (7282), 813-817, 2010 | 981 | 2010 |
| Conserved patterns of protein interaction in multiple species R Sharan, S Suthram, RM Kelley, T Kuhn, S McCuine, P Uetz, T Sittler, ... Proceedings of the National Academy of Sciences 102 (6), 1974-1979, 2005 | 954 | 2005 |
| Network-based stratification of tumor mutations M Hofree, JP Shen, H Carter, A Gross, T Ideker Nature methods 10 (11), 1108-1115, 2013 | 894 | 2013 |
| Differential network biology T Ideker, NJ Krogan Molecular systems biology 8 (1), 565, 2012 | 886 | 2012 |
| An atlas of combinatorial transcriptional regulation in mouse and man T Ravasi, H Suzuki, CV Cannistraci, S Katayama, VB Bajic, K Tan, ... Cell 140 (5), 744-752, 2010 | 861 | 2010 |
| Complementary profiling of gene expression at the transcriptome and proteome levels in saccharomyces cerevisiae* S TJ Griffin, SP Gygi, T Ideker, B Rist, J Eng, L Hood, R Aebersold Molecular & Cellular Proteomics 1 (4), 323-333, 2002 | 853 | 2002 |
| DNA methylation aging clocks: challenges and recommendations CG Bell, R Lowe, PD Adams, AA Baccarelli, S Beck, JT Bell, ... Genome biology 20, 1-24, 2019 | 790 | 2019 |
Keiichiro OnoUniversity of California, San DiegoVerified email at ucsd.edu